Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq444815 722 0.0 seq366117 190 5e-46 seq2918661 141 2e-31 seq341544 107 4e-21 >seq444815 Length=5597 Score = 722 bits (800), Expect = 0.0 Identities = 400/400 (100%), Gaps = 0/400 (0%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2309 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 2368 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2369 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 2428 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2429 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 2488 Query 181 GCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTAC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2489 GCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTAC 2548 Query 241 ATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2549 ATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGC 2608 Query 301 TTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCAC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2609 TTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCAC 2668 Query 361 TTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 |||||||||||||||||||||||||||||||||||||||| Sbjct 2669 TTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 2708 >seq366117 Length=3063 Score = 190 bits (210), Expect = 5e-46 Identities = 263/364 (72%), Gaps = 17/364 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| |||||| |||| | ||||| | ||| || Sbjct 2097 CGACTACGCTTTTCAGCCTCGCCTTAGGGGCCGACTAACCCTGCGCAGATTAGCTTTACG 2156 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||||| |||||| | | || ||| | || | || |||||||| | Sbjct 2157 CAGGAACCCTTGGTCTTTCGGCGAGAGTGTCTCTCACAC-TCTTATCGTTACTCATGTCA 2215 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACG 178 ||||||||||| | | ||||| | || |||| | | ||||||| | || Sbjct 2216 GCATTCTCACTTCCGATACCTCCAGC-CAGGCTCACGCCTGACCTTCACCGGCCTACGGA 2274 Query 179 ACGCTCCCCTACCC---------AACCACACAGGTTGCCACAGCTTCGGCGGATAACTTA 229 ||||||| ||||| ||| || | ||| | |||||||| | ||| Sbjct 2275 ACGCTCCGCTACCGCTTGCAGTAAACTGCAAAC----CCATATCTTCGGCGCACGGCTTG 2330 Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289 ||||||| |||||| || |||| | ||| ||||| ||||||||| |||||| ||||| | Sbjct 2331 AGCCCCGTTACATTTTCCGCGCAGGATCGCTTGATCAGTGAGCTGTTACGCTTTCTTTAA 2390 Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349 |||||||||||||| |||||||||||||| ||||| | |||| ||||||| |||||||| Sbjct 2391 AGGATGGCTGCTTCTAAGCCAACCTCCTGATTGTCAAAGCAATCCCACATCGTTTCCCAC 2450 Query 350 TGAG 353 | || Sbjct 2451 TTAG 2454 >seq2918661 Length=438 Score = 141 bits (156), Expect = 2e-31 Identities = 217/302 (72%), Gaps = 17/302 (6%) Strand=Plus/Plus Query 106 CGCTACTCATGCCTGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCT 164 || |||||||| | |||||| |||| | || | ||||| || || || | || || Sbjct 16 CGTTACTCATGTCAGCATTCGCACTTCTGAT-ACCTCCAGCAAACC-TCTCGATTCACCT 73 Query 165 TCACCA-CTGACACGACGCTCCCCTACC-------CAACCACACAGGTTGCCACAGCTTC 216 |||| || ||| ||||||| ||||| ||| ||| || || ||||||| Sbjct 74 TCACAGGCTTACAGAACGCTCCTCTACCATGCGTGCAAGCACGCAT----CCGCAGCTTC 129 Query 217 GGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATT 276 || | | || ||||||| || || || |||| | ||| ||| ||||||||||| Sbjct 130 GGTT-ACACATTTAGCCCCGTTATATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATT 188 Query 277 ACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCA 336 |||| ||||| |||| |||||||||| ||||||||||||| | |||||| || ||| Sbjct 189 ACGCTTTCTTTAAAGGGTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCA 248 Query 337 CATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 |||| ||||||||| | | | |||||| ||||||||| | |||||| ||||||||| Sbjct 249 CATCGTTTCCCACTTAATGTGTA-TTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCT 307 Query 397 CT 398 || Sbjct 308 CT 309 >seq341544 Length=690 Score = 107 bits (118), Expect = 4e-21 Identities = 108/138 (78%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 |||||||| ||||||||||||| || || ||||||||||||||||||| |||| | |||| Sbjct 689 AGTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTC 630 Query 325 TACGCAACTCCACATCCTT--TCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATC 382 || |||| | ||| | || | | ||| | | || ||| |||||||||||| || Sbjct 629 TAAGCAATTGCACCGCGTTTGTTCAACTTAACATATATTTGGGGACCTTAGCTGATGGTC 570 Query 383 TGGGCTGTTTCCCTCTCG 400 |||| | ||||||||||| Sbjct 569 TGGGTTCTTTCCCTCTCG 552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1142195950592