Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq444815 125 6e-27 seq454181 104 2e-20 seq365039 89.7 4e-16 >seq444815 Length=5597 Score = 125 bits (138), Expect = 6e-27 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| ||||||| ||| || ||||| | |||| |||| ||||| | Sbjct 4197 TCGAGTTGCAGACCCCAATCCGAACTGAGACCGGCTTTCCGAGATTCGCTCACCCTCACA 4256 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | || | ||||||| |||||||| | | |||||||||| |||||||| || Sbjct 4257 GGCTCGCCACTCTCTGTACCAGCCATTGTAGCATGCGTGAAGCCCTGGACATAAGGGGCA 4316 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||| |||||||||||||||||||||||||||| Sbjct 4317 TGATGACTTGACGTCATCCCCACCTTCCTCCG 4348 >seq454181 Length=858 Score = 104 bits (114), Expect = 2e-20 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 70 CCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTT 129 ||||||||| |||||||| ||||||| ||||| || |||||||||||||||||| Sbjct 202 CCCTCTGTAGTCGCCATTGTAGCACGTGTGTAGCCCACCCTGTAAGGGCCATGAGGACTT 143 Query 130 GACGTCATCCCCACCTTCCTCCGGTTT 156 |||||||||||||||||||||||| || Sbjct 142 GACGTCATCCCCACCTTCCTCCGGCTT 116 >seq365039 Length=401 Score = 89.7 bits (98), Expect = 4e-16 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 43 GATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAG 102 |||| ||||| |||||| |||| || | ||| |||||||||| ||||||| || Sbjct 196 GATTCGCTCCTTCTCGCGAAGTGGCTGCTCATTGTCCATACCATTGTAGCACGTGTGTAG 137 Query 103 CCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTG 157 ||| | |||||||| ||| || ||||||||||||||||||||||| | ||||| Sbjct 136 CCCAGGACGTAAGGGCCGTGATGATTTGACGTCATCCCCACCTTCCTCACAGTTTG 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403883974260