Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq444815 230 4e-58 seq3002212 226 5e-57 seq2671760 140 5e-31 seq2844597 109 9e-22 >seq444815 Length=5597 Score = 230 bits (254), Expect = 4e-58 Identities = 222/283 (78%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| |||||||||||| | | |||| | ||||||||||||||||||| Sbjct 4756 CCCACGCTTTCGCTCCTCAGCGTCAGGAAAGGCCCAGAGAACCGCCTTCGCCACTGGTGT 4815 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| |||||| |||||| ||||||| ||| |||||||| | || || | | Sbjct 4816 TCCTCCTGATATCTGCGCATTCCACCGCTCCACCAGGAATTCCATTCTCCCCTACCTTCC 4875 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| || | || || || ||| ||| ||||| ||||| || || ||| || ||| Sbjct 4876 TCAAGTCAACCCGTATCGAAAGCACGCTCAGGGTTAAGCCCCAAGATTACACTTCCGAC- 4934 Query 181 TGCCTTC--CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 || || || ||||| ||||||||| ||||||||||||||| |||||| || |||| Sbjct 4935 -GCGATCAACCACCTACGAGCCCTTTACGCCCAATAAATCCGGACAACGCTCGCACCCTA 4993 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATT 281 ||||| |||||||||||||||||||||||||||| |||| || Sbjct 4994 CGTATCACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTCTT 5036 >seq3002212 Length=1337 Score = 226 bits (250), Expect = 5e-57 Identities = 224/290 (77%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||| | |||| |||||||||||||||||| Sbjct 1128 CCCACGCTTTCGAGCCTCAGCGTCAGTAATGAGCCAGTGTGTCGCCTTCGCCACTGGTGT 1069 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || |||| ||||||||| |||||||| |||||| |||| |||| |||||| || Sbjct 1068 TCTTCCGAATATCTACGAATTTCACCTCTACACTCGGAGTTCCACACACCTCTCTCATAC 1009 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||| | |||| ||||| ||| |||||||||| | |||||| |||||| Sbjct 1008 TCAAGACACCCAGTATCAAAGGCAATTCCGAGGTTGAGCCCCGGGATTTCACCCCTGACT 949 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| | |||||||| |||| ||| |||| |||||| ||| ||| || Sbjct 948 TAAATGTCCGCCTACGCTCCCTTTACGCCCAGTAATTCCGAGCAACGCTAGCCCCCTTCG 889 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| ||||| ||| | |||| Sbjct 888 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTCTCCGGGTA 839 >seq2671760 Length=249 Score = 140 bits (154), Expect = 5e-31 Identities = 127/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 131 CAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCG 190 |||| ||||||||| | ||||||||||| | |||||||||||||| | ||| Sbjct 232 CAGTATCAAATGCAATTCCTAGGTTGAGCCCAGGGCTTTCACATCTGACTGACAAATCCG 173 Query 191 CCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCG 250 ||||| ||| |||||| |||| ||| |||| |||||||||| ||| |||||||||||| Sbjct 172 CCTACGCGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCCGTATTACCGCG 113 Query 251 GCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||| ||||||||| |||| ||| ||||| Sbjct 112 GCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGTAGGTA 73 >seq2844597 Length=341 Score = 109 bits (120), Expect = 9e-22 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| |||||| |||||| | |||||| | |||||||||||||| ||| Sbjct 115 CCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGCAGTCGCCTTCGCCACTGATGT 56 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 |||| | || |||||||||||||||||||||| | |||||| Sbjct 55 TCCTTCAGATCTCTACGCATTTCACCGCTACACCTGAAATTCC 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 804661148718