Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq2903806 131 2e-28 seq2792347 118 1e-24 seq366117 114 1e-23 seq2626207 104 2e-20 >seq2903806 Length=412 Score = 131 bits (144), Expect = 2e-28 Identities = 101/120 (84%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 60 CACTATGACCTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATG 119 ||||||||||| |||||| |||||||||| ||| ||||||||| |||| |||| | Sbjct 1 CACTATGACCTACTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTTAAGCTTGCTTCTA 60 Query 120 CCATTGCACTAACCTCACGATGTCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| |||||||| ||||||||||||||| ||||| |||||||||||||||||||| Sbjct 61 CCATTACACTAACCGTACGATGTCCGACCGTACTTAGCAAACCTTCGTGCTCCTCCGTTA 120 >seq2792347 Length=302 Score = 118 bits (130), Expect = 1e-24 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| | ||||||||||||||||||| || |||||| ||||| Sbjct 112 TTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTATGCTCTACTTTCGTACCTGA 53 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| | || |||| ||||||||| |||||||||||||||| Sbjct 52 TCGACCTGTATGTCTCTCAGTCAAGCTCCCTTATGCCATTGCACT 8 >seq366117 Length=3063 Score = 114 bits (126), Expect = 1e-23 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 37 CCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTCGAGCCGTCAC 96 ||||||| || | ||||||||||||||||| || |||||| |||||||| |||| Sbjct 1166 CCTTCCACTCGGGACCACCGGATCACTATGGCCGACTTTCGTCTCTGCTCGACTTGTCAG 1225 Query 97 TCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAG 156 ||||||||||| || ||||||||||||||||| | |||| |||||||| | || Sbjct 1226 TCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCGACGACCGATTTCCGACCGGTCTGAG 1285 Query 157 CTGACCTTCGTGCTCCTCCGTTA 179 | ||| ||| || ||||||||| Sbjct 1286 CCCACCATCGCGCGCCTCCGTTA 1308 >seq2626207 Length=235 Score = 104 bits (114), Expect = 2e-20 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| Sbjct 170 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGACCTACTTTCGTACCTG 229 Query 84 CTCGA 88 ||||| Sbjct 230 CTCGA 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 459806370696