Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq444815 311 1e-82 seq366117 275 9e-72 seq393147 208 1e-51 seq2792347 183 5e-44 seq2485450 143 4e-32 seq2626207 127 3e-27 seq2985889 73.4 6e-11 >seq444815 Length=5597 Score = 311 bits (344), Expect = 1e-82 Identities = 229/267 (86%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 9 GCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCA 68 ||||| |||||||||| |||||| ||||| | || || |||| ||||| |||| Sbjct 813 GCTTCCCGCTTAGATGCTTTCAGCGGTTATCACAACCCGACGTAGCCAACCAGCCATGCT 872 Query 69 CTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGAC 128 |||||||| |||||||| |||||||||| |||| || ||||||||||||||||| ||| Sbjct 873 CTTGGCAGAACAACTGGCACACCAGAGGTCAGTCCGTCTCGGTCCTCTCGTACTAAAGAC 932 Query 129 AGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTC 188 ||| | |||||| ||||| ||| | | |||||||||||||||||||||| |||||||| Sbjct 933 AGCCCTTCTCAAGATTCCTCCGCGCGCAGCGGATAGGGACCGAACTGTCTCACGACGTTC 992 Query 189 TGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCA 248 ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| || Sbjct 993 TGAACCCAGCTCGCGTGCCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCGACTCCA 1052 Query 249 GCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||||| ||||||||||||||| Sbjct 1053 GCCCCAGGATGCGACGAGCCGACATCG 1079 >seq366117 Length=3063 Score = 275 bits (304), Expect = 9e-72 Identities = 217/260 (83%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| ||||| |||||||| ||| ||| || |||| Sbjct 823 GCTTAGATGCTTTCAGCGGTTATCTATTCCATACTTAGCTACCCTGCTGCACAGCTGGCG 882 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | || ||| |||||||||| ||||||||||||||||||||||||| |||||| |||| Sbjct 883 CCATGACAGGTACACCAGAGGTATGTCCATCCCGGTCCTCTCGTACTAGGGACAGATCCT 942 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| ||| || |||||| | |||||||||| ||||||||| ||||||||||||||| Sbjct 943 CTCAAGCTTCGAACACCCACGGCAGATAGGGACCAAACTGTCTCACGACGTTCTGAACCC 1002 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| || |||||| ||||||||||| ||||||||||||| || ||||||||| Sbjct 1003 AGCTCACGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCTGCTCCAGCCCCAG 1062 Query 256 GATGAGACGAGCCGACATCG 275 |||| || |||||||||||| Sbjct 1063 GATGTGATGAGCCGACATCG 1082 >seq393147 Length=436 Score = 208 bits (230), Expect = 1e-51 Identities = 144/163 (88%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 113 CTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAA 172 ||||||||||| || || |||||||||| | |||||| |||||| | ||||||||||||| Sbjct 218 CTCTCGTACTAGGGGCAACTCCTCTCAAGTATCCTACACCCACGGCAGATAGGGACCGAA 159 Query 173 CTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACC 232 ||||||| ||||||||| |||||||||| ||| ||||||||| ||||||||||| ||| Sbjct 158 CTGTCTCACGACGTTCTAAACCCAGCTCACGTACCTCTTTAAACGGCGAACAGCCGTACC 99 Query 233 CTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||| || |||||||||||||||| |||||||||||| Sbjct 98 CTTGGGACCTGCTCCAGCCCCAGGATGAGATGAGCCGACATCG 56 >seq2792347 Length=302 Score = 183 bits (202), Expect = 5e-44 Identities = 110/116 (95%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 302 GATAGAGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGC 243 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||||||||||||||||| || ||||||||||||| ||||||||||||||| Sbjct 242 GAACAGCCCAACCCTTGGGACCTTCTCCAGCCCCAGGATGTGACGAGCCGACATCG 187 >seq2485450 Length=206 Score = 143 bits (158), Expect = 4e-32 Identities = 121/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || ||| |||| ||||| |||| |||||| |||||||||||| || ||||| |||||| Sbjct 58 GGTGGGTTTCGCGCTTATATGCTTTCAGCGCTTATCCCTTCCCGACGTAGCTACCCAGCA 117 Query 64 ATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTA 123 ||| | |||| | ||||||||| |||||||||| ||||| ||||||||||||||||| Sbjct 118 GTGCTCCTGGCGGAACAACTGGTACACCAGAGGTCAGTCCAATCCGGTCCTCTCGTACTA 177 Query 124 AGGACAGCTCCTCTCAAATTTCCTACGCC 152 | ||| ||| |||||||||| | |||| Sbjct 178 GGATCAGATCCACTCAAATTTCTTGCGCC 206 >seq2626207 Length=235 Score = 127 bits (140), Expect = 3e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||| |||||||||||||| || |||||| ||||||||||| ||||||||||| Sbjct 2 CGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGAC 61 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||||||||||||||||| || |||||||||||| Sbjct 62 CGACTTCAGCCCCAGGATGTGATGAGCCGACATCG 96 >seq2985889 Length=754 Score = 73.4 bits (80), Expect = 6e-11 Identities = 87/118 (74%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217 ||||||| || || ||| ||| || || ||||||| ||| || ||| |||||||| Sbjct 426 CGGATAGAAACTGACCTGGCTCCCGCCGGTCTGAACTCAGATCACGTAGGATTTTAATGG 367 Query 218 GCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||| ||||||||||| | || || || | |||||| ||| || |||||| Sbjct 366 TCGAACAGACCAACCCTTGGAAACTGCTGCATCTCCAGGAAATCCCGATCCAACATCG 309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 758059151688