Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq2666731 309 7e-82 seq3002212 264 3e-68 seq444815 217 3e-54 seq2385878 203 8e-50 seq2826223 158 3e-36 >seq2666731 Length=247 Score = 309 bits (342), Expect = 7e-82 Identities = 191/204 (94%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || ||||||||||||||||||||||||| ||||||||||||||||||||||| || | || Sbjct 26 GTGCTTTACAACCCGAAGGCCTTCTTCACACACGCGGCATGGCTGCATCAGGGTTTCCCC 85 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 86 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 145 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 ||||||||| ||||||||||||||||||||||||||||||||| |||| ||| ||||| | Sbjct 146 GTGTGGCTGATCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCCTTACCTC 205 Query 181 GCCAACTAGCTAATCCCATCTGGG 204 ||||||||||||||||| || || Sbjct 206 ACCAACTAGCTAATCCCACCTAGG 229 >seq3002212 Length=1337 Score = 264 bits (292), Expect = 3e-68 Identities = 304/410 (74%), Gaps = 32/410 (8%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||| || ||| ||||| |||| |||||||||||||||| |||||||| |||||||| Sbjct 810 TTTACAATCCTAAGACCTTCATCATTCACGCGGCATGGCTGCGTCAGGCTTTCGCCCATT 751 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | |||| |||||||||||||||||||||||||||| ||| |||||||||||| ||| ||| Sbjct 750 GCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGT 691 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||||||||| ||||||||||| |||| ||| ||||| | ||| Sbjct 690 GGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCTCACCA 631 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | ||| || | | || | || | ||| | || Sbjct 630 ACTAGCTAATCAGACGCGGGCCGCTCTAAAGGCGATA------AATCTTTCCCCCGAAGG 577 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 | || || |||||||||| |||||| ||||| || || ||||| Sbjct 576 GC-----AC---ATTCGGTATTAGCACAAGTTTCCCTGAGTTATTCCGAACCTAAAGGCA 525 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 |||||| |||||||||||||||||||| | ||||| || | Sbjct 524 CGTTCCCACGTGTTACTCACCCGTCCGCCACT-AACTCCGAAG-----AGTT-------- 479 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 478 ----CGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCGCTCTGAG 433 >seq444815 Length=5597 Score = 217 bits (240), Expect = 3e-54 Identities = 305/421 (72%), Gaps = 24/421 (6%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||| || || |||||||| | |||||||||||||| |||||||| Sbjct 5079 TTTACAACCCGAAGGCCGTCATCCCGCACGCGGCGTTGCTGCATCAGGCTTCCGCCCATT 5138 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||| Sbjct 5139 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGT 5198 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| ||||| |||||||| || |||| || |||| ||| |||| |||||| ||| Sbjct 5199 GGCCGGTCACCCTCTCAGGCCGGCTACCCGTCAAAGCCTTGGTAAGCCACTACCCCACCA 5258 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGT------CCCCCT 238 || |||| || | || ||||| | | ||||| | ||||| Sbjct 5259 ACAAGCTGATAAGCCGCGAGTCCATCCCCAACCG------CCGAAACTTTCCAACCCCCA 5312 Query 239 CTTTG-GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCC--CCTC 295 | || | | | ||| ||||||||||| | |||||| | |||||||| || Sbjct 5313 CCATGCAGCAGGAGCTCCTATCCGGTATTAGCCCCAGTTTCCTGAAGTTATCCCAAAGTC 5372 Query 296 CATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCA-GCAA 353 | |||| ||| | || |||||||||||| ||||||||| ||| || || Sbjct 5373 AA--GGGCAGGTTACTCACGTGTTACTCACCCGTTCGCCACTCG--AGCACCCCACAAAA 5428 Query 354 GCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGA 413 || | | || ||||||||||||||||||||| || ||||||||||||| |||| Sbjct 5429 GCAGGGCC---TTTCCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCGTCCTGA 5485 Query 414 G 414 | Sbjct 5486 G 5486 >seq2385878 Length=192 Score = 203 bits (224), Expect = 8e-50 Identities = 144/165 (87%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 |||||||||||||| |||||| |||| |||||||| || ||||||||||||||||||| Sbjct 185 CACGCGGCATGGCTAGATCAGGGTTGCCCCCATTGTCTAAGATTCCCCACTGCTGCCTCC 126 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||||||||||| |||||||||||| ||||||| |||| ||||||||| | |||||||| Sbjct 125 CGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTTGCTGATCATCCTCTAAAACCAGCTA 66 Query 151 GGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||| | || ||| |||||||||||| ||||||| |||||| Sbjct 65 TAGATCGTAGACTTGGTAGGCCATTACCCCACCAACTATCTAATC 21 >seq2826223 Length=326 Score = 158 bits (174), Expect = 3e-36 Identities = 138/172 (80%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 23 TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTG 82 ||||| | ||||||||||||||| ||||| |||| ||||||| ||||||||| ||||| Sbjct 12 TCTTCCTGCACGCGGCATGGCTGGATCAGAGTTGCCTCCATTGTCCAATATTCCTCACTG 71 Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 ||||||||||||||||||||| |||||||||||| ||||||||| | || |||||||| Sbjct 72 CTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCCCCCTCTCAG 131 Query 143 ACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 | ||| ||||| | || ||| ||| ||||| ||||| | ||||| Sbjct 132 GGCCCCTACCTATCGTAGTCTTGGTAAGCCGTTACCTTACCAACAAACTAAT 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185649057408