Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq3002212 403 5e-110 seq444815 394 3e-107 seq2666731 257 5e-66 seq2826223 188 2e-45 seq2385878 174 5e-41 seq2671760 120 9e-25 >seq3002212 Length=1337 Score = 403 bits (446), Expect = 5e-110 Identities = 296/343 (86%), Gaps = 1/343 (0%) Strand=Plus/Plus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| | Sbjct 611 CCCGCGTCTGATTAGCTAGTTGGTGAGGTAAAGGCTCACCAAGGCGACGATCAGTAGCTG 670 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 |||||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||| Sbjct 671 GTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGC 730 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 ||||||||||||| |||| |||||||| ||||||||| ||||| | ||||||||| ||| Sbjct 731 AGCAGTGGGGAATCTTGCGCAATGGGCGAAAGCCTGACGCAGCCATGCCGCGTGAATGAT 790 Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397 ||||| ||| || | ||||| ||| || | ||| |||||||||||||| | || | Sbjct 791 GAAGGTCTTAGGATTGTAAAATTCTTTCACCGGGGACGATAATGACGGTACCCGGAGAAG 850 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 851 AAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCG 910 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||| |||||||||||| ||||||| || ||||||| Sbjct 911 GAATTACT-GGGCGTAAAGGGAGCGTAGGCGGACATTTAAGTC 952 >seq444815 Length=5597 Score = 394 bits (436), Expect = 3e-107 Identities = 376/475 (79%), Gaps = 7/475 (1%) Strand=Plus/Minus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACC 81 ||| |||| ||||||||||||| |||| |||||||||||| || ||||||| | Sbjct 5413 GAGTGGCGAACGGGTGAGTAACACGTGAGTAACCTGCCCTTGACTTTGGGATAACTTCAG 5354 Query 82 GAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCC 141 |||| |||||||| |||| | || | ||||||| | || |||| | | Sbjct 5353 GAAACTGGGGCTAATACCGGATAGGAG-CTCCTGCTGCATGGTGGGGGTTGGAAAGTTTC 5295 Query 142 GGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGG 201 |||||| |||| ||| |||| || || |||| |||||| |||| |||||||||||| Sbjct 5294 GGCGGTTGGGGATGGACTCGCGGCTTATCAGCTTGTTGGTGGGGTAGTGGCTTACCAAGG 5235 Query 202 CGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCA 261 | || ||||||| ||||||||||||| |||||||||||| ||||||| |||| ||| Sbjct 5234 CTTTGACGGGTAGCCGGCCTGAGAGGGTGACCGGCCACATTGGGACTGAGATACGGCCCA 5175 Query 262 AACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCA 321 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 5174 GACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGATGCAGCA 5115 Query 322 ACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAA--GCTCTGTCCT-CAAGGAA--GA 376 |||||||||| | ||||| ||||||||||| ||||| ||| | ||| | ||| | Sbjct 5114 ACGCCGCGTGCGGGATGACGGCCTTCGGGTTGTAAACCGCTTTCGCCTGTGACGAAGCGT 5055 Query 377 TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 436 | |||||||| | | | ||||| ||||||||||||||||||||||||||||| |||| Sbjct 5054 GAGTGACGGTAATGGGTAAAGAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTGATAC 4995 Query 437 GTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 |||||| || |||||| |||||| ||| | |||||||||||| ||||||||||| Sbjct 4994 GTAGGGTGCGAGCGTTGTCCGGATTTA-TTGGGCGTAAAGGGCTCGTAGGTGGTT 4941 >seq2666731 Length=247 Score = 257 bits (284), Expect = 5e-66 Identities = 187/217 (86%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 149 CAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGAT 208 ||||||| || || ||||||||||||||| |||||| |||| |||||||||||||| Sbjct 238 CAGGATATGCCTAGGTGGGATTAGCTAGTTGGTGAGGTAAGGGCTCACCAAGGCGACGAT 179 Query 209 CAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCT 268 | |||| | |||||||| ||||| |||||| |||||||||||||||||||| |||||| Sbjct 178 CCCTAGCTGGTCTGAGAGGATGATCAGCCACACTGGAACTGAGACACGGTCCAGACTCCT 119 Query 269 ACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGC 328 ||||||||||||||||||||||||||||||||||| ||| ||||||||||| | ||||| Sbjct 118 ACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCCATGCCGC 59 Query 329 GTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTC 365 ||| | || |||||||||||||| ||||||| || || Sbjct 58 GTGTGTGAAGAAGGCCTTCGGGTTGTAAAGCACTTTC 22 >seq2826223 Length=326 Score = 188 bits (208), Expect = 2e-45 Identities = 228/308 (74%), Gaps = 3/308 (1%) Strand=Plus/Minus Query 25 CGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCGAA 84 ||||| ||||||| ||||||||| || ||||| | ||| | ||||| | | ||| Sbjct 325 CGGCGCACGGGTGCGTAACGCGTATACAATCTGCCTTATACTGAGGGATAGCCCAGAGAA 266 Query 85 AGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGT-ATCAAAGCTCCGG 143 | | |||||| || ||| | ||| ||||||||| | || |||| | Sbjct 265 ATTTGGATTAATACCTCATGGTATCATATTACCGCATGGTATTTATGATTAAAGGTTA-- 208 Query 144 CGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCG 203 ||||| | ||| ||||| ||||| | ||||||||||||||||||||||||| | Sbjct 207 CGGTATAAGATGAGTATGCGTCCTATTAGTTTGTTGGTAAGGTAACGGCTTACCAAGACT 148 Query 204 ACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA 263 ||||| |||| | |||||||||| |||| ||||| ||| |||||||||||| ||| | Sbjct 147 ACGATAGGTAGGGGCCCTGAGAGGGGGATCCCCCACACTGGTACTGAGACACGGACCAGA 88 Query 264 CTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAAC 323 ||||||||||||||||||||| ||||||||| ||||||| || ||||| |||| | Sbjct 87 CTCCTACGGGAGGCAGCAGTGAGGAATATTGGACAATGGAGGCAACTCTGATCCAGCCAT 28 Query 324 GCCGCGTG 331 |||||||| Sbjct 27 GCCGCGTG 20 >seq2385878 Length=192 Score = 174 bits (192), Expect = 5e-41 Identities = 152/189 (80%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 ||||| | ||||||| |||||| |||||||| ||||| ||| ||||||| | |||||| Sbjct 4 AGGATTGGCCCGCGTTAGATTAGATAGTTGGTGGGGTAATGGCCTACCAAGTCTACGATC 63 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 |||| | | ||||| ||||| || ||| ||| |||||||||||| ||| ||||||| Sbjct 64 TATAGCTGGTTTTAGAGGATGATCAGCAACACTGGGACTGAGACACGGCCCAGACTCCTA 123 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 ||||||||||||||||||||| || |||||||| || |||||| ||| | |||||| Sbjct 124 CGGGAGGCAGCAGTGGGGAATCTTAGACAATGGGGGCAACCCTGATCTAGCCATGCCGCG 183 Query 330 TGAGCGATG 338 |||| |||| Sbjct 184 TGAGTGATG 192 >seq2671760 Length=249 Score = 120 bits (132), Expect = 9e-25 Identities = 100/121 (83%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 380 TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA 439 ||||| ||| | || ||||| |||||||||| |||||||||||||||||||||||| | Sbjct 67 TGACGTTACCTACAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGA 126 Query 440 GGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||| || ||||||| |||||||||| |||||||||| | ||||||| || || | ||| Sbjct 127 GGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCGCGTAGGCGGATTTGTCAGT 185 Query 500 C 500 | Sbjct 186 C 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1452575284992