Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq3002212 408 1e-111 seq444815 347 3e-93 seq2844597 230 5e-58 seq2671760 165 2e-38 >seq3002212 Length=1337 Score = 408 bits (452), Expect = 1e-111 Identities = 331/400 (83%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 847 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 906 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 |||||||||||||||||||||| ||||||| || ||||||||| ||||||| | Sbjct 907 CTCGGAATTACTGGGCGTAAAGGGAGCGTAGGCGGACATTTAAGTCAGGGGTGAAATCCC 966 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 ||||||||| ||| | ||| ||||| |||| | || |||| ||| || ||| Sbjct 967 GGGGCTCAACCTCGGAATTGCCTTTGATACTGGGTGTCTTGAGTATGAGAGAGGTGTGTG 1026 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||| ||| ||||||| |||||||| |||||||||| ||| |||||||||||||||||||| Sbjct 1027 GAACTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTGGCGAAGGCG 1086 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 | |||| | |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1087 ACACACTGGCTCATTACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 1146 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 ||||||||||||||||||||||||||||| | |||| ||||||| |||| | | || Sbjct 1147 ACCCTGGTAGTCCACGCCGTAAACGATGATTGCTAGTTGTCGGGATGCAT--GCATTTCG 1204 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| |||||| |||||| |||| | ||| ||||||||||| Sbjct 1205 GTGACGCAGCTAACGCATTAAGCAATCCGCCTGGGGAGTA 1244 >seq444815 Length=5597 Score = 347 bits (384), Expect = 3e-93 Identities = 321/401 (80%), Gaps = 7/401 (2%) Strand=Plus/Minus Query 12 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 71 ||||| ||||||||||||||||||||||||||||| |||||||||| || |||||| ||| Sbjct 5034 GAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTGATACGTAGGGTGCGAGCGTTGTCC 4975 Query 72 GGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATG 131 ||| ||| ||||||||||||| ||||||||||| | ||| || ||| || | | Sbjct 4974 GGATTTATTGGGCGTAAAGGGCTCGTAGGTGGTTGATCGCGTCGGAAGTGTAATCTTGGG 4915 Query 132 GCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG-AGGGGCAAGTGGA 190 ||| ||||| | | |||||| || || | | || ||| | ||| ||||| | |||| Sbjct 4914 GCTTAACCCTGAGCGTGCTTTCGATACGGGTTGACTTGAG-GAAGGTAGGGGAGAATGGA 4856 Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGC 250 |||||| ||| ||||||| |||||| |||||| |||||||||||||||||||||||||| Sbjct 4855 ATTCCTGGTGGAGCGGTGGAATGCGCAGATATCAGGAGGAACACCAGTGGCGAAGGCGGT 4796 Query 251 TTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATAC 310 | |||| | | ||||| |||||| |||||||||||||||| |||||| |||||||| Sbjct 4795 TCTCTGGGCCTTTCCTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAGGCTTAGATAC 4736 Query 311 CCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT---AAGTGCTCC 367 ||||||||||||||| ||||||| || |||||||||| |||| ||| | | | ||| Sbjct 4735 CCTGGTAGTCCACGCTGTAAACGGTGGGTACTAGGTGT-GGGGTCCATTCCACGGGTTCC 4677 Query 368 GGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||||| ||| ||||| |||||| || ||||||||||| Sbjct 4676 -GTGCCGTAGCTAACGCTTTAAGTACCCCGCCTGGGGAGTA 4637 >seq2844597 Length=341 Score = 230 bits (254), Expect = 5e-58 Identities = 186/224 (83%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 ||||||||| | |||||||||||||||||||||| || | ||||||| |||||||||| Sbjct 10 AGTGGAATTTCAGGTGTAGCGGTGAAATGCGTAGAGATCTGAAGGAACATCAGTGGCGAA 69 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 |||| || |||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 70 GGCGACTGCCTGGACTGATACTGACACTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATT 129 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGC 364 |||||||||||||||||||||||||||||||| |||||| ||| ||| | | | | Sbjct 130 AGATACCCTGGTAGTCCACGCCGTAAACGATGTCTACTAGTTGTTGGGAGACTTGATCTC 189 Query 365 TCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | || || ||| ||||| ||||||| || ||||||||||| Sbjct 190 T-TAGTAACGAAGCTAACGCGATAAGTAGACCGCCTGGGGAGTA 232 >seq2671760 Length=249 Score = 165 bits (182), Expect = 2e-38 Identities = 135/164 (82%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || ||||| |||||||||| |||||||||||||||||||||||| |||| || ||||||| Sbjct 81 GAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTA 140 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 |||||||||||||||||||| | ||||||| || || | ||||||| ||||||| | Sbjct 141 ATCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGGATTTGTCAGTCAGATGTGAAAGCCC 200 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGT 172 ||||||||| || | ||| ||||| ||||| | ||||||| Sbjct 201 TGGGCTCAACCTAGGAATTGCATTTGATACTGCGAGTCTAGAGT 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1167026297344