Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq341544 306 1e-80 seq444815 297 6e-78 seq338761 260 5e-67 seq2636106 259 2e-66 seq366117 197 5e-48 seq2918661 179 1e-42 seq2892277 113 1e-22 >seq341544 Length=690 Score = 306 bits (338), Expect = 1e-80 Identities = 324/421 (77%), Gaps = 6/421 (1%) Strand=Plus/Plus Query 57 CCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAA 116 |||||| |||| ||||| || |||||||| | |||||| ||||||| | | |||||| Sbjct 273 CCATGGGCAGGTTGAAGCTGTGGTAACACACAGTGGAGGACCGAACCAGTTGACGTTGAA 332 Query 117 AAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGT 176 || | |||||| ||||||||||||||||||||| || |||||| |||||||||| || Sbjct 333 AAGTCTTTGGATGACCTGTGGGTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTCGT 392 Query 177 TCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCG--GGGGTAGAGC-ACT 233 ||| |||||| |||||||| || | | ||| | | | |||||||| ||| Sbjct 393 ACTCCCCGAAATGCATTTAGGTGCAGCGTTGA-TATTAGTTTTATAGAGGTAGAGCTACT 451 Query 234 GTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAG 293 | | ||| | |||| | | | | |||||| | | |||||||||||||| | Sbjct 452 GAT-TGGATGCGGGGGCTTCACCGCCTACCAATTCCTGACAAACTCCGAATGCTATAAAA 510 Query 294 TTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353 | || | | ||||||||||||||||||||||||| || |||||||| ||||| || Sbjct 511 TGATAAT-CAGCAGTGAGGGCATGGGTGCTAAGGTCCATGTCCGAGAGGGAAAGAACCCA 569 Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 ||| ||||||||||| ||| |||| | |||||| ||| |||| || |||||| | Sbjct 570 GACCATCAGCTAAGGTCCCCAAATATATGTTAAGTTGAACAAACGCGGTGCAATTGCTTA 629 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 630 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 689 Query 474 A 474 | Sbjct 690 A 690 >seq444815 Length=5597 Score = 297 bits (328), Expect = 6e-78 Identities = 418/566 (74%), Gaps = 22/566 (4%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 ||||||||| |||||| |||||| | | |||||||||| | |||||||| ||||| Sbjct 3041 CGAGTCCGATAAGGGCGTGAGTCGCGTGTTCTAGACCCGAAGCGGTGTGATCTATCCATG 2982 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 |||||||||||| |||||| ||| | |||||||||||||||||| |||||||| Sbjct 2981 GCCAGGATGAAGCGTCGGTAAGACGTCGTGGAGGTCCGAACCCACTTCAGTTGAAAATGG 2922 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 |||||||||| ||||| |||||||||||||| || ||||| | ||||||||||||| Sbjct 2921 AGGGGATGAGTTGTGGATAGGGGTGAAAGGCCAATCAAACACCGTGATAGCTGGTTCTCC 2862 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGT-ATCACCATCGGGGGTAGAGCACTGTTATGG 240 |||||| |||||||| || | || | | || |||||||||||| |||| Sbjct 2861 CCGAAATGCATTTAGGTGCAGCGTTGCGTGGTTCTTGTTGGAGGTAGAGCACTG-GATGG 2803 Query 241 -CTAGGGGGTCATTGCGACTTACC-AAACCATTGCAAACTCCGAATGC--GCATCAGTTT 296 |||||||| | | || |||||| ||| || |||||||||||||| ||| || | Sbjct 2802 TCTAGGGGG-CTTATCGGCTTACCGAAATCA-GCCAAACTCCGAATGCTGGCA--AG-TG 2748 Query 297 TACCGCGGGAGTGAG--GGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGG 354 || || || |||||| ||| ||| | |||| | ||| ||||||| || | || | Sbjct 2747 TAGCGTGGCAGTGAGACGGC--GGGGGATAAGCTTCGTCGTCGAGAGGGAAACAGCCCAG 2690 Query 355 ACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 | ||||||||||||||| || || || ||| | || || || |||| || Sbjct 2689 ATCATCAGCTAAGGCCCCTAAGTGGTGACTCAGTGGGA--AAGGATGTGGAGTTGCGTAG 2632 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 ||| | |||| ||||||||||||||||||| || || ||||||||||||| |||||||| Sbjct 2631 ACAACCAGGAGGTTGGCTTGGAAGCAGCCA-TCCTTGAAAGAGTGCGTAATAGCTCACTG 2573 Query 475 GTCGAG-GAGTCGGGCGTGGATAAT-AATCGGGTATTAAGTTGTCTACCGAAGCAGTGGG 532 ||| || || || ||| |||||| | |||| ||||||| || ||||||| |||| Sbjct 2572 GTCAAGTGATTC-CGCGCCGATAATGTAGCGGGGCTTAAGTTATCCGCCGAAGCTGTGGC 2514 Query 533 ATCATTTATATGATCGGTAGGGGAGC 558 | | | | | | | ||||||||||| Sbjct 2513 AACCTGTGT-GGTTGGGTAGGGGAGC 2489 >seq338761 Length=448 Score = 260 bits (288), Expect = 5e-67 Identities = 171/189 (90%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 143 GGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTG 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 196 GGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTG 137 Query 203 CCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTAC 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 136 CCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTAC 77 Query 263 CAAACCATTGCAAACTCCGAATGCGCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGC 322 |||||||||||||||||||||| | || ||| | | ||||| || |||||| Sbjct 76 CAAACCATTGCAAACTCCGAATACCGATGAGTGCGAGCTTGGGAGACAGACGTCGGGTGC 17 Query 323 TAAGGTCCG 331 ||| ||||| Sbjct 16 TAACGTCCG 8 Score = 217 bits (240), Expect = 5e-54 Identities = 120/120 (100%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 1 TCGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 TCGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 363 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 303 >seq2636106 Length=238 Score = 259 bits (286), Expect = 2e-66 Identities = 202/239 (85%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 45 CAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCC 104 || |||||||| |||||| |||| ||||||| |||||| ||||||| ||||||| Sbjct 1 CAGGTGATCTAGCCATGGGCAGGTTGAAGGTTGAGTAACATCAACTGGAGGACCGAACCG 60 Query 105 ACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTG 164 ||||||||||||||||||| |||||| ||||| |||||||||||||| || ||||| || Sbjct 61 ACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTAGGGGTGAAAGGCCAATCAAACCTG 120 Query 165 GAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGG 222 || ||||||||||||| |||||| |||||||||||| ||||| | | || || | ||| Sbjct 121 GAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGGACGAAT-ACTACTGGG 179 Query 223 GGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCG 281 ||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||| Sbjct 180 GGTAGAGCACTGTTAAGGCTAGGGGGTCATCCCGACTTACCAACCCTTTGCAAACTCCG 238 >seq366117 Length=3063 Score = 197 bits (218), Expect = 5e-48 Identities = 188/237 (79%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAG--TCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| |||||| | ||| | || |||||||||||| |||||||| ||| Sbjct 2859 CGAGTCTGAATAGGGCGCTAAGTTCGACGTATGACGACCCGAAACCAGGTGATCTATCCA 2800 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| ||||||| |||||||| ||||||| |||||||| |||||||||||| Sbjct 2799 TGAGCAGGTTGAAGGTTGGGTAACACCAACTGGAGGACCGAACCCGTGAATGTTGAAAAA 2740 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 || ||||||| ||||| |||||||||||||| || ||||| |||| |||||||||||| Sbjct 2739 TTCTGGGATGACTTGTGGATAGGGGTGAAAGGCCAATCAAACCTGGACATAGCTGGTTCT 2680 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTG 234 | ||||| |||||||||||| || || | | || || | ||||||||||||||| Sbjct 2679 CCGCGAAATCTATTTAGGTAGAGCGTCCGACGAAT-TCCTTGGGGGGTAGAGCACTG 2624 Score = 77.0 bits (84), Expect = 1e-11 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 395 AACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAA 454 ||||| || ||||||| |||| |||| |||||||| |||||||||| || |||||| Sbjct 2444 AACGATGTGGGATTGCTTTGACAATCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAA 2386 Query 455 GAGTGCGTAACAGCTCACT 473 || ||||||||||||||| Sbjct 2385 GAAAGCGTAACAGCTCACT 2367 >seq2918661 Length=438 Score = 179 bits (198), Expect = 1e-42 Identities = 232/314 (74%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 ||| | ||||||||||||||||| |||||||||||||| ||||||||||| || ||| Sbjct 433 ACCCTAGGGGGTAGAGCACTGTTTGGGCTAGGGGGTCATCCCGACTTACCAACCCCATGC 374 Query 274 AAACTCCGAATGCGCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTG 333 ||||||||||| | | |||| | | ||| || || ||||||||| |||||| Sbjct 373 AAACTCCGAATACCTAGGAGTTCAATCACGGCAGACAGACAGCGGGTGCTAACGTCCGTT 314 Query 334 CCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAAC 393 | ||||| || || || ||| ||||||||| ||| || ||| ||||| | Sbjct 313 GTCAAGAGGGAAACAACCCAGACCGCCAGCTAAGGTCCCTAATACACA-TTAAGTGGGA- 256 Query 394 TAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAA 453 ||||| || || ||| |||||||||||| |||||||| |||||||||| | ||||| Sbjct 255 -AACGATGTGGGAAGGCTTAGACAGCTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAA 198 Query 454 AGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATA-ATCGGGTATTAAG 512 ||| |||||| ||||||||||||||| | | ||| ||| ||| | |||| | || Sbjct 197 AGAAAGCGTAATAGCTCACTAGTCGAGTCGGCCTGCGCGGAAGATATAACGGGGCTAAAT 138 Query 513 TTGTCTACCGAAGC 526 ||| |||||||| Sbjct 137 GTGT-AACCGAAGC 125 >seq2892277 Length=395 Score = 113 bits (124), Expect = 1e-22 Identities = 129/173 (75%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 36 ACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGG---TGCGGTAACACGCCCTGG 92 ||||||| | |||||||||| ||||| |||| |||| | ||||||| || Sbjct 184 ACCCGAAGCTAAGTGATCTAACCATGAGCAGGTTGAAAAATTTATGGTAACATAATTTGA 125 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||| | |||||| |||||||||| ||||||| ||||| |||||||||||||| Sbjct 124 AGGACTGAACCCGTATCTGTTGAAAAAGGTTGGGATGACTTGTGGTTAGGGGTGAAAGGC 65 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCT 205 ||| ||||||| | ||||||||||| ||| ||||| ||||| ||| |||| Sbjct 64 TAATCAAACTTAGGAATAGCTGGTTTTCTGCGAAATATATTTTAGTATAGCCT 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1638802885632