Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq444815 666 0.0 seq366117 356 8e-96 seq2903806 221 4e-55 seq2668772 138 4e-30 seq1787166 134 5e-29 seq1697694 123 8e-26 >seq444815 Length=5597 Score = 666 bits (738), Expect = 0.0 Identities = 486/564 (86%), Gaps = 11/564 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| |||||| ||||||||| |||||||||||||||||||||||||||||| || Sbjct 1214 TCGACCTGTCAGTCTCACAGTCAAGCCCCCTTGTGCACTTACACTCACCACCTGATTACC 1273 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||| Sbjct 1274 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACCCTTTAGGAGG-CGACCGCCCCAG 1332 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | |||||||||| |||||||||||| | || ||||| || ||| || ||||| ||| Sbjct 1333 TCAAACTACCCATCAGGCACTGTCCTTGAACCGGATCACGGTCCACAGTGAGATAACCAG 1392 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 || |||||||||||||||| |||||||||||| ||||||||||||||||||||| || Sbjct 1393 AACAATCAGAGTGGTATTTCACCAACGACTCCACCACCACTAGCGTGGCCGCATCAACGT 1452 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 |||||||||||||||||||||||| || | |||||||||| ||||||| |||||||| Sbjct 1453 CTCCCACCTATCCTACACAAACCGTCCCAATCACCAATACCAAACTATAGTAAAGGTCCC 1512 Query 301 GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGG 360 ||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||| Sbjct 1513 GGGGTCTTTCCGTCCTGCTGCGCGTAACGAGCATCTTTACTCGTAATGCAATTTCACCGA 1572 Query 361 GCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 420 | |||| ||||||| |||| | ||||||| ||||||||||||||||||||||||||| Sbjct 1573 GTTCATGGTGGAGACAGTAGGGAAATCGTTACTCCATTCGTGCAGGTCGGAACTTACCCG 1632 Query 421 ACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1633 ACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTAA 1692 Query 481 ATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGG 540 || |||| | || || ||||| ||| ||||||||||||||||||| Sbjct 1693 GTTCACCGCTACGCATAC----------ACTCACAGTTCCCCTTAACCTTCCAGCACCGG 1742 Query 541 GCAGGCGTCAGTCCGTATACCTCG 564 ||||| |||||||||||||| ||| Sbjct 1743 GCAGGAGTCAGTCCGTATACATCG 1766 >seq366117 Length=3063 Score = 356 bits (394), Expect = 8e-96 Identities = 354/453 (78%), Gaps = 4/453 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||||||| ||||||||||||| || ||| ||| || ||||| || ||| |||| | Sbjct 1214 TCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCGACGACC-GATTTC 1272 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| | ||||| ||| | | |||||||||||||| ||| ||||| | ||||||||| Sbjct 1273 CGACCGGTCTGAGCCCACCATCGCGCGCCTCCGTTACACTTTAGGAGG-CGACCGCCCCA 1331 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||||||||||| || |||||| || ||| | || || ||||||| || | Sbjct 1332 GTCAAACTACCCACCACGCCATGTCCCGGGACCGGATAACGGCCCTCGGTTAGACGTCAA 1391 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 | || || || |||||||||||| |||||||||| | || ||| | | |||||| Sbjct 1392 CGACAGTAAGGGTGGTATTTCAAGGACGACTCCACCAGAGCTGGCGCCCCGGTTTCATAG 1451 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 |||||||||||||||||||| || | | || ||||| | |||||||||| ||||| | Sbjct 1452 TCTCCCACCTATCCTACACATACGGTCGCTAACGCCAAGGCGAAGCTATAGTAAAGGTTC 1511 Query 300 CG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 |||||||| |||| ||||| ||| | ||||||| || | | | ||||||||| Sbjct 1512 ATAGGGTCTTTCCGTCTGACCGCGGGAACCCCGCATCTTCACGGGGAATTCAATTTCACT 1571 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 | |||| || | ||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 1572 GAGCCTATGCTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 1631 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTAT 451 |||||||||||||||||||||||||| ||||| Sbjct 1632 CGACAAGGAATTTCGCTACCTTAGGACCGTTAT 1664 >seq2903806 Length=412 Score = 221 bits (244), Expect = 4e-55 Identities = 285/384 (74%), Gaps = 11/384 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| |||||||||| ||||| ||| | | ||||||| ||| ||| || Sbjct 26 TCGACGTGTCTGTCTCGCAGTTAAGCTTGCTTCTACCATTACACTAACCGTACGATGTCC 85 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| || || |||||| | || |||||||||| ||||||||| | ||||||||| Sbjct 86 GACCGTACTTAGCAAACCTTCGTGCTCCTCCGTTACTCTTTGGGAGGAGA-CCGCCCCAG 144 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGA-TCATGGGCCAAGGTTAG-ATATC- 177 | ||||||||||||||||||||||| |||||| || ||| ||||| | ||||| | ||| Sbjct 145 TCAAACTACCCACCAGGCACTGTCCTCAACCCCGATTCAGGGGCCTAAGTTAGAACATCA 204 Query 178 -CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCA 236 |||||| || |||||||||||| || ||||||| |||||||| | || ||| Sbjct 205 ACACTAC---AAGGGTGGTATTTCAAGGTCGGCTCCACAGAAACTAGCGTTCCTGCTTCA 261 Query 237 TAGTCTCCCACCTATCCTACACAAACCGCACCGAATG-CCAATACCAAGCTATAGTGAAG 295 || ||||||||||||||||||| | | |||| || | ||||||| |||| ||| Sbjct 262 AAGCCTCCCACCTATCCTACACATGTAGGGTC-AATGTTCAGTGCCAAGCTGTAGTAAAG 320 Query 296 G-TCCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 | || |||||||||| |||| |||||| | | ||||||| || | | |||||| Sbjct 321 GTTCACGGGGTCTTTCCGTCTAGCCGCGGGTACACTGCATCTTCACAGCGATTTCAATTT 380 Query 355 CACCGGGCCTGTGGTTGAGACAGC 378 ||| | | || ||| |||||||| Sbjct 381 CACTGAGTCTCGGGTGGAGACAGC 404 >seq2668772 Length=248 Score = 138 bits (152), Expect = 4e-30 Identities = 180/246 (73%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 54 GATTGCCAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACC 113 |||| || ||| ||||| |||||| | ||||||||||||| ||||||||| | ||| Sbjct 243 GATTTCCGACCGCTCTGAGCCAACCTTCGCGCGCCTCCGTTACTGTTTGGGAGG-CGACC 185 Query 114 GCCCCAGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGA 173 |||||||| ||||||||| ||| ||| ||||| | || ||| | || || ||||||| Sbjct 184 GCCCCAGTCAAACTACCCGCCACGCAGGGTCCCGGATCCGGATAACGGACCGCGGTTAGA 125 Query 174 TATCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCA 233 ||| | | || | ||||| |||| | | |||||| | |||||||| |||| Sbjct 124 CATCAAGAGTGCGAAGGGCGGTATCTCAAGGATGGCTCCACGAGAACTAGCGTTCCCGCT 65 Query 234 TCATAGTCTCCCACCTATCCTACACAAACCGCA--CCGAATGCCAATACCAAGCTATAGT 291 ||| || || || |||||||| ||| | |||| || |||||| | | ||||| |||| Sbjct 64 TCAAAGCCTACCGCCTATCCTGCAC--ATCGCAATCCTGATGCCAGTGCGAAGCTGTAGT 7 Query 292 GAAGGT 297 ||||| Sbjct 6 AAAGGT 1 >seq1787166 Length=133 Score = 134 bits (148), Expect = 5e-29 Identities = 106/127 (83%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 330 AGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGT 389 |||||||| ||| | | ||||||||| | | || ||| |||||||| || | || Sbjct 127 AGCATCTTCACTGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGTGGCCATGGT 68 Query 390 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTT 449 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 67 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 8 Query 450 ATAGTTA 456 ||||||| Sbjct 7 ATAGTTA 1 >seq1697694 Length=128 Score = 123 bits (136), Expect = 8e-26 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 331 GCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTT 390 ||||||| || | | ||||||||| | | || ||| |||||||| || || || Sbjct 121 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGTGGCCATCATT 62 Query 391 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 61 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 2 Query 451 T 451 | Sbjct 1 T 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1651218059008