Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq2826223 212 1e-52 seq3002212 183 6e-44 seq2666731 152 1e-34 seq2385878 132 1e-28 seq444815 123 5e-26 >seq2826223 Length=326 Score = 212 bits (234), Expect = 1e-52 Identities = 199/251 (79%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 108 TCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTG 167 || |||| ||||| | ||||||| ||||| | | ||||||| |||||||||||||||| Sbjct 12 TCTTCCTGCACGCGGCATGGCTGGATCAGAGTTGCCTCCATTGTCCAATATTCCTCACTG 71 Query 168 CTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAG 227 ||||||||||||||||| ||| |||||||||||| ||| ||||||||| | |||||||| Sbjct 72 CTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCCCCCTCTCAG 131 Query 228 AACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCA 287 |||||| | ||||||| || ||| ||||||||| || || | ||||| | ||||| Sbjct 132 GGCCCCTACCTATCGTAGTCTTGGTAAGCCGTTACCTTACCAACAAACTAATAGGACGCA 191 Query 288 TCCCCATCGTACACCGATGAATCTTTAATGAT-GATACCATGCAATCTCATCATACCATC 346 | | |||| || |||| || ||||||| || ||||||||| | || ||||||| Sbjct 192 TACTCATCTTATACCG--TAACCTTTAATCATAAATACCATGCGGTAATATGATACCATG 249 Query 347 AGGTATTAATC 357 ||||||||||| Sbjct 250 AGGTATTAATC 260 >seq3002212 Length=1337 Score = 183 bits (202), Expect = 6e-44 Identities = 160/198 (81%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 |||||| |||||||||| ||| |||||||| ||||||| | |||||| |||| || | Sbjct 817 AAAGAATTTTACAATCCTAAGA-CCTTCATCATTCACGCGGCATGGCTGCGTCAGGCTTT 759 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| ||| ||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 758 CGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGT 699 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 ||||||||| || | |||||||||| | ||| ||||| | || |||| ||| ||| Sbjct 698 CCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTA 639 Query 262 CCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 638 CCTCACCAACTAGCTAAT 621 >seq2666731 Length=247 Score = 152 bits (168), Expect = 1e-34 Identities = 149/191 (78%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||| ||| || ||||| || ||||| | |||||| |||| | || |||| Sbjct 30 TTTACAACCCGAAGG-CCTTCTTCACACACGCGGCATGGCTGCATCAGGGTTTCCCCCAT 88 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || ||||||||| |||||||||||||||||||||| |||||||||||||||||||| || Sbjct 89 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 148 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 ||| || | |||||||||| | ||| ||||| | || |||| ||| ||||| | || Sbjct 149 TGGCTGATCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCCTTACCTCACC 208 Query 269 TACTACCTAAT 279 |||| ||||| Sbjct 209 AACTAGCTAAT 219 >seq2385878 Length=192 Score = 132 bits (146), Expect = 1e-28 Identities = 136/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 109 CATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGC 168 |||| |||||| | ||||| | |||| | | |||||| | || ||||| |||||| Sbjct 192 CATCACTCACGCGGCATGGCTAGATCAGGGTTGCCCCCATTGTCTAAGATTCCCCACTGC 133 Query 169 TGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 |||||||||||||||| ||| |||||||||||| ||| ||| | || | |||||| | | Sbjct 132 TGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTTGCTGATCATCCTCTAAAA 73 Query 229 ACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGC 286 | |||| ||||||| || ||| |||| ||||||| || |||| ||||| ||||| Sbjct 72 CCAGCTATAGATCGTAGACTTGGTAGGCCATTACCCCACCAACTATCTAATCTAACGC 15 >seq444815 Length=5597 Score = 123 bits (136), Expect = 5e-26 Identities = 147/198 (74%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 |||| |||||||| ||| || || |||||| ||||| | | |||| |||| || Sbjct 5072 AAAGCGGTTTACAACCCGAAGG-CCGTCATCCCGCACGCGGCGTTGCTGCATCAGGCTTC 5130 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| ||||||||| |||||||||||||||||||||| ||| |||| ||||||| Sbjct 5131 CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGT 5190 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 ||||||||| | | |||||||| | ||| || || || || ||| ||| || Sbjct 5191 CCCAATGTGGCCGGTCACCCTCTCAGGCCGGCTACCCGTCAAAGCCTTGGTAAGCCACTA 5250 Query 262 CCCCGCCTACTACCTAAT 279 |||| || || | || || Sbjct 5251 CCCCACCAACAAGCTGAT 5268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1036666976896