Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2830548 123 2e-23 seq103958 120 2e-22 seq1153379 96.9 3e-15 seq244905 91.5 1e-13 seq2986189 86.0 5e-12 >seq2830548 Length=329 Score = 123 bits (136), Expect = 2e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||| | || ||||| ||||| |||||||| |||||||||| |||||||| ||| Sbjct 185 TACTCAATGATCTCGGTACACAGGTTACTGCACTTGATGGTGCCCAGGTTCTGTTGGTTA 126 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 ||||||| ||||| ||||||||||||| ||||||||| || |||||||| |||| | Sbjct 125 CTCTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTACCGGTCTCCGTCTGGGCC 66 Query 66173 TCAATGATGGCGTGCCAAAGA 66193 | | |||||| ||||| ||| Sbjct 65 TGCACGATGGCCTGCCAGAGA 45 >seq103958 Length=1487 Score = 120 bits (132), Expect = 2e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 66037 CTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCC 66096 |||||| || || ||||||| ||| || |||||||| |||||||| |||||||| Sbjct 684 CTCGTCCGGGCTGGAGTACTCGATAATCTCCGTGCACAGGTTACTGCACTTGATGGTGCC 625 Query 66097 CAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCC 66156 || |||||||| |||||||| | ||||| ||||||||||||| ||||||||| || || Sbjct 624 CAGGTTCTGTTGGTTACTCTTACTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTACC 565 Query 66157 GGTCTC 66162 |||||| Sbjct 564 GGTCTC 559 >seq1153379 Length=123 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 |||||| | || ||| | ||||| || || |||||||| |||||||| ||||| ||||| Sbjct 117 CAGGAGATACAGGTGCCTGAGGCACGCTGCTTCTACGGATTCCAGATCGCCATCGAGAAC 58 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 ||||||||||||||||||| | || || || || ||||||| Sbjct 57 ATCCACTCGGAGATGTACAGCTTGCTGATTGACACCTACATCA 15 >seq244905 Length=747 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || || ||||| ||||||||||| ||||| |||||||| ||||| | |||| || Sbjct 47 CACGTCTTGGCCTTCTTTGCCGCCAGCGACGGCATCGTCAACGAGAACCTGGTGGAGCGG 106 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| |||||| | || ||| | ||||| || || |||||||| |||||||| ||||| Sbjct 107 TTCAGCCAGGAGATACAGGTGCCTGAGGCACGCTGCTTCTACGGATTCCAGATCGCCATC 166 Query 61324 GAG 61326 ||| Sbjct 167 GAG 169 >seq2986189 Length=758 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 |||| ||||||||||| || || | |||| |||||||| || || ||||| |||| Sbjct 407 GTGAGCAACATTTCATCAAGCACATCCTGGCCTTCTTTGCAGCAAGTGATGGTATAGTCA 348 Query 61244 ATGAGAATTTATTGGA-ACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||||||| | | || | |||| | |||||||| ||| | | ||||| | |||||| Sbjct 347 ATGAGAACCTCGTAGAGAGGTTTAGT-CAGGAGGTACAAATTCCTGAGGCAAGATGTTTC 289 Query 61303 TACGGCTTCCAGATTGCCATGGAG 61326 || ||||||||||| | |||||| Sbjct 288 TATGGCTTCCAGATGGTTATGGAG 265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383000628665120