Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq9 208 1e-51 seq3 208 1e-51 seq10 187 5e-45 >seq9 Length=97764462 Score = 208 bits (230), Expect = 1e-51 Identities = 218/281 (78%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| | || |||| |||| || | || ||||||||||||||||||||||| || Sbjct 39112218 TGCTCTTGATTGAGTGTCTCGGGTGACCGGAACGTTTACTTTGAAAAAATTAGAGTGCTC 39112159 Query 100 AAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||| ||||| ||||| |||||||||||| ||| ||||| | ||||||| Sbjct 39112158 AAAGCAGGCGATTTGCCTGAATAATGGTGCATGGAATAATGGAAGAGGACCT-CGGTTCT 39112100 Query 159 ATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 ||||||||||||| | ||| | ||||||||||| ||||| | |||||| | ||| Sbjct 39112099 ATTTTGTTGGTTTTCGGAACCAGAGGTAATGATTAAGAGGGACTGACGGGGGCATTGGTA 39112040 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || ||| ||||||||||||||||||| ||||||||| |||||||||| || Sbjct 39112039 TTGCGGTGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACTAACAGCTGCGAAAGCATTT 39111980 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||||||| |||||| ||| || || Sbjct 39111979 GCCAAGAATGTTTTCATTAATCA-AGAACGATAGTCAGAGG 39111940 >seq3 Length=91555047 Score = 208 bits (230), Expect = 1e-51 Identities = 218/281 (78%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| | || |||| |||| || | || ||||||||||||||||||||||| || Sbjct 68333191 TGCTCTTGATTGAGTGTCTCGGGTGACCGGAACGTTTACTTTGAAAAAATTAGAGTGCTC 68333250 Query 100 AAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||| ||||| ||||| |||||||||||| ||| ||||| | ||||||| Sbjct 68333251 AAAGCAGGCGATTTGCCTGAATAATGGTGCATGGAATAATGGAAGAGGACCT-CGGTTCT 68333309 Query 159 ATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 ||||||||||||| | ||| | ||||||||||| ||||| | |||||| | ||| Sbjct 68333310 ATTTTGTTGGTTTTCGGAACCAGAGGTAATGATTAAGAGGGACTGACGGGGGCATTGGTA 68333369 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || ||| ||||||||||||||||||| ||||||||| |||||||||| || Sbjct 68333370 TTGCGGTGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACTAACAGCTGCGAAAGCATTT 68333429 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||||||| |||||| ||| || || Sbjct 68333430 GCCAAGAATGTTTTCATTAATCA-AGAACGATAGTCAGAGG 68333469 >seq10 Length=87592839 Score = 187 bits (206), Expect = 5e-45 Identities = 213/281 (76%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| | || |||| |||| || | || ||||||||||||||||||||||| || Sbjct 11828850 TGCTCTTGATTGAGTGTCTCGGGTGACCGGAACGTTTACTTTGAAAAAATTAGAGTGCTC 11828909 Query 100 AAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||||||| ||||| ||||| |||||||||||| ||| ||||| | ||||||| Sbjct 11828910 CAAGCAGGCGATTTGCCTGAATAATGGTGCATGGAATAATGGAAGAGGACCT-CGGTTCT 11828968 Query 159 ATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 ||||||||||||| | ||| | ||||||||||| ||||| | |||||| | ||| Sbjct 11828969 ATTTTGTTGGTTTTCGGAACCAGAGGTAATGATTAAGAGGGACTGACGGGGGCATTGGTA 11829028 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 | ||| |||||||||||||| |||| ||||||||| |||||||||| | Sbjct 11829029 CTGCGGTGTTAGAGGTGAAATTCTCGGATCGCCGCAAGACTAACAGCTGCGAAAGCACTT 11829088 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||||||| | |||| ||| || || Sbjct 11829089 GCCAAGAATGTTTTCATTAATCA-AGGACGATAGTCAGAGG 11829128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915153883072