Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq657 242 2e-61 seq10 179 2e-42 seq9 172 2e-40 seq14 154 6e-35 >seq657 Length=4699 Score = 242 bits (268), Expect = 2e-61 Identities = 227/283 (80%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 4235 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 4176 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCG-TGAGGG-TGCACCATCG 520 ||||||| | ||||| ||| ||| || ||||| ||| |||||| |||||| || Sbjct 4175 AACCCGTAAGGCGTAAGGAAGCTGATTGG---TGGGATCCCCCTGAGGGGTGCACCGCCG 4119 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| ||||||| |||| ||||||||||||| Sbjct 4118 ACCGACCTTGATCTTCTGTGAAGGGTTCGAGTGTGAGCATACCTGTCGGGACCCGAAAGA 4059 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 4058 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 3999 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 3998 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 3956 Score = 158 bits (174), Expect = 5e-36 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| ||| |||| | || || || Sbjct 4620 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTGAATTCCGTCCAAGGC 4561 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 4560 TAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 4501 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 4500 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 4456 >seq10 Length=87592839 Score = 179 bits (198), Expect = 2e-42 Identities = 224/309 (72%), Gaps = 30/309 (10%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||||||||||| | |||||| | |||| | | Sbjct 11831555 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATGGGGTTTTAC 11831614 Query 464 --AACCCGTGCGCGTAATGAAAGTGAA--------CGG--------AGGTGGGAACC--- 502 |||| ||| |||||||||||| ||| |||||||| || Sbjct 11831615 GAAACCTAAAGGCGCAATGAAAGTGAAGGCAGCCTCGGGTTTGCCTAGGTGGGATCCTCT 11831674 Query 503 ------CGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTGAGTAA 554 || | || |||||| || || || | | | | | || ||| || Sbjct 11831675 CCCTCGCGGGGAGGCGCACCACCGGCCCGTCTCGTCCGCATTGTCGGTGAGGCGGAGCAA 11831734 Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||| || ||||||||||||||||||||||||||||| ||| |||| |||||||||| Sbjct 11831735 GAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCTTGAGTAGGACGAAGCCAGAG 11831794 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || |||| ||||| |||||||||||||||||||| ||| ||| Sbjct 11831795 GAAACTCTGGTGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGAGTA 11831854 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 11831855 TAGGGGCGA 11831863 Score = 152 bits (168), Expect = 2e-34 Identities = 219/309 (71%), Gaps = 36/309 (12%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT--C 462 || ||||||||| |||||||||||||||||||||||| | |||||| | |||| | | Sbjct 12680099 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATGGGGTTTTAC 12680158 Query 463 AAACCCGTGCG-CGTAATGAAAGTGAA--------CGG--------AGGTGGGAACC--- 502 ||| || | | || |||||||||||| ||| |||| ||| || Sbjct 12680159 AAAACCTAGAGGCGCAATGAAAGTGAAGGCAGCCTCGGGTTTGCCTAGGTTGGATCCTCT 12680218 Query 503 ------CGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTGAGTAA 554 || | || |||||| || || || | | | | | || ||| || Sbjct 12680219 CCCTCGCGGGGAGGCGCACCACCGGCCCGTCTCGTCCGCATTGTCGGTGAGGCGGAGCAA 12680278 Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||| || ||||||||||||||||||||||||||||| ||| |||| |||| Sbjct 12680279 GAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCTTGAGTAGGACGAAG------ 12680332 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || |||| ||||| |||||||||||||||||||| ||| ||| Sbjct 12680333 GAAACTCTGGTGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGAGTA 12680392 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 12680393 TAGGGGCGA 12680401 >seq9 Length=97764462 Score = 172 bits (190), Expect = 2e-40 Identities = 119/135 (88%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||||||||||||||||||||||||||| ||| |||| |||| Sbjct 39109339 GAGCAAGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCTTGAGTAGGACGAAG 39109280 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||||||| | Sbjct 39109279 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACT 39109220 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 39109219 TGAGTATAGGGGCGA 39109205 >seq14 Length=46529346 Score = 154 bits (170), Expect = 6e-35 Identities = 105/118 (89%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||| Sbjct 11796845 TTGGGATTCGAAAGATGGTGAACTATGCTTGAGTAGGACGAAGCCAGAGGAAACTCTGGT 11796786 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| || |||| ||||| |||||||||||||||||||| ||| |||||||||||| Sbjct 11796785 GGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGAGTATAGGGGCGA 11796728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079891913450