Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq657 403 3e-110 seq14 379 3e-103 seq10 379 3e-103 seq4 150 3e-34 seq3 102 1e-19 seq6 78.8 2e-12 >seq657 Length=4699 Score = 403 bits (446), Expect = 3e-110 Identities = 266/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 1759 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1817 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 1818 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1877 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1878 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1937 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1938 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 1997 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| ||| || ||||||||||| |||||||| |||||| |||| |||||| Sbjct 1998 CGAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 2050 >seq14 Length=46529346 Score = 379 bits (420), Expect = 3e-103 Identities = 262/296 (89%), Gaps = 3/296 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG---GTCATCAGTAGGGTAAAACTAACCTGTC 57 |||| ||| | |||||||||| ||||| |||| ||||||||||||||||||||||| Sbjct 11794539 TACTGAGCAGGATTACCATTGCAACGACGCTAGTCAACAGTAGGGTAAAACTAACCTGTC 11794598 Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 11794599 TCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAGCCAACGCTTGG 11794658 Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 11794659 TGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 11794718 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 11794719 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTG 11794778 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | ||| | | | |||||||||||||||||| |||||| ||| ||||||| Sbjct 11794779 CTTAAAACTCTTAAAATCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 11794834 >seq10 Length=87592839 Score = 379 bits (420), Expect = 3e-103 Identities = 262/296 (89%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG---GTCATCAGTAGGGTAAAACTAACCTGTC 57 |||| ||| | |||||||||| ||||| |||| ||||||||||||||||||||||| Sbjct 11834052 TACTGAGCAGGATTACCATTGCAACGACGCTAGTCAACAGTAGGGTAAAACTAACCTGTC 11833993 Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 11833992 TCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAGCCAACGCTTGG 11833933 Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 11833932 TGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 11833873 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 11833872 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTG 11833813 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | ||| | | | |||||||||||||||||| |||||| ||| ||||||| Sbjct 11833812 CTTAAAACTCTTAAAATCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 11833757 >seq4 Length=56899080 Score = 150 bits (166), Expect = 3e-34 Identities = 97/106 (92%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 ||||||||| |||||||||||||||||||| ||||||| |||||||| ||| ||||| Sbjct 30002797 TTCTGCTTCACAATGATAGGAAGAGCCGACATGGAAGGATAAAAAAGCAGTGTCACTATG 30002856 Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 30002857 AACGCTTGGCTGCTACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 30002902 Score = 104 bits (114), Expect = 4e-20 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30002700 AAAAAGCAGTGTCACTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 30002759 Query 223 TTCTG 227 ||||| Sbjct 30002760 TTCTG 30002764 >seq3 Length=91555047 Score = 102 bits (112), Expect = 1e-19 Identities = 94/118 (80%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 || ||||||| |||||||| |||||||||||| || ||||||||||||| ||||||| || Sbjct 38700497 ATTAACGCTTTGCTGCCACGAGCCAGTTATCCTTGCGGTAACTTTTCTGACACCTCTTGC 38700438 Query 239 --CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||| ||||||||| |||||| ||| |||||||| Sbjct 38700437 TTTTTAAACTCTTAAAATCAAAAGGATCAATAGGCCACGCTTTCAAGGTCTGTATTCA 38700380 Score = 95.1 bits (104), Expect = 2e-17 Identities = 92/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 || || |||| |||||||| |||||||||||| || |||||||||| || ||||||| || Sbjct 39421592 ATTAATGCTTTGCTGCCACGAGCCAGTTATCCTTGCGGTAACTTTTTTGACACCTCTTGC 39421533 Query 239 CTCAAATTTC-GAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| || | | |||||||| |||||||| |||||| ||| |||||||| Sbjct 39421532 TTTAAAACTCTTAAAATCAAAAGGATCAATAGGCCATGCTTTCACGGTCTGTATTCA 39421476 >seq6 Length=53286271 Score = 78.8 bits (86), Expect = 2e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 || |||||||||||| ||| |||||||||| ||| |||||||||||||| |||||||| Sbjct 41755331 AAAGTCGCTATGAACACTTAGCTGCCACAACCCATTTATCCCTGTGGTATCTTTTCTG 41755388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854356946784