Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq14 634 2e-179 seq10 634 2e-179 seq657 549 6e-154 seq12 147 7e-33 seq13 89.7 2e-15 seq9 86.0 2e-14 >seq14 Length=46529346 Score = 634 bits (702), Expect = 2e-179 Identities = 465/539 (86%), Gaps = 15/539 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| |||| || ||| |||| | ||||||||||||||||||| Sbjct 11794868 CTTTTACTCTACGCGAGGTTTCCGTCCTCGCTGAGCTCACCTTAGGACACCTGCGTTACC 11794927 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||| ||||||||| |||||||||| ||||||| |||||||| |||||| Sbjct 11794928 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCATCAGAGCGGATC 11794987 Query 127 GGCCCG-----CGAAGGAC-----CTTAACGCCAGAAAATGGTCGGTGAAGACCAGT--T 174 ||| |||||| | ||||| ||||||| | | | | || | Sbjct 11794988 ACCCCCGACAACGAAGGCCGGGGGCTTAATGCCAGAATCGAGAGGCTTTCGCCCCCCCCT 11795047 Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC 234 |||||| | ||| |||||||| ||||||| | |||||||||||||| ||| |||||| Sbjct 11795048 CCGCTTTACTGAATAAGTAAAGAAACGATGAAAGTAGTGGTATTTCAATTGTGCCGAA-- 11795105 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||| ||| ||||||| ||| ||| |||||||||||||||||||||||||||| Sbjct 11795106 -GCTCCCACCTATGCTACACCAATCATGTCTCTTCACAAAGTCGGACTAGAGTCAAGCTC 11795164 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 11795165 AACAGGGTCTTCTTTCCCCGCTGTTTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 11795224 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11795225 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 11795284 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11795285 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 11795344 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11795345 GATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 11795403 >seq10 Length=87592839 Score = 634 bits (702), Expect = 2e-179 Identities = 465/539 (86%), Gaps = 15/539 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| |||| || ||| |||| | ||||||||||||||||||| Sbjct 11833723 CTTTTACTCTACGCGAGGTTTCCGTCCTCGCTGAGCTCACCTTAGGACACCTGCGTTACC 11833664 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||| ||||||||| |||||||||| ||||||| |||||||| |||||| Sbjct 11833663 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCATCAGAGCGGATC 11833604 Query 127 GGCCCG-----CGAAGGAC-----CTTAACGCCAGAAAATGGTCGGTGAAGACCAGT--T 174 ||| |||||| | ||||| ||||||| | | | | || | Sbjct 11833603 ACCCCCGACAACGAAGGCCGGGGGCTTAATGCCAGAATCGAGAGGCTTTCGCCCCCCCCT 11833544 Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC 234 |||||| | ||| |||||||| ||||||| | |||||||||||||| ||| |||||| Sbjct 11833543 CCGCTTTACTGAATAAGTAAAGAAACGATGAAAGTAGTGGTATTTCAATTGTGCCGAA-- 11833486 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||| ||| ||||||| ||| ||| |||||||||||||||||||||||||||| Sbjct 11833485 -GCTCCCACCTATGCTACACCAATCATGTCTCTTCACAAAGTCGGACTAGAGTCAAGCTC 11833427 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 11833426 AACAGGGTCTTCTTTCCCCGCTGTTTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 11833367 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11833366 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 11833307 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11833306 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 11833247 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11833246 GATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 11833188 Score = 176 bits (194), Expect = 1e-41 Identities = 99/100 (99%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 12681819 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTT 12681760 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||| Sbjct 12681759 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 12681720 Score = 104 bits (114), Expect = 8e-20 Identities = 57/57 (100%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6060196 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 6060252 >seq657 Length=4699 Score = 549 bits (608), Expect = 6e-154 Identities = 340/363 (94%), Gaps = 3/363 (1%) Strand=Plus/Plus Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA 232 |||||||| | ||| |||||||| ||||||| | |||||||||||||| ||| |||||| Sbjct 2346 TTCCGCTTTACTGAATAAGTAAAGAAACGATGAAAGTAGTGGTATTTCAATTGTGCCGAA 2405 Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 |||||||| ||| ||||||| ||| ||| |||||||||||||||||||||||||| Sbjct 2406 ---GCTCCCACCTATGCTACACCAATCATGTCTCTTCACAAAGTCGGACTAGAGTCAAGC 2462 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2463 TCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 2522 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2523 CTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 2582 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2583 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 2642 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2643 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTAAAC 2702 Query 533 ATC 535 ||| Sbjct 2703 ATC 2705 Score = 242 bits (268), Expect = 1e-61 Identities = 217/266 (82%), Gaps = 7/266 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 2084 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 2143 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2144 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 2203 Query 127 GGCCCGCGAAGGA--CCTT-AACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCA 182 |||| || ||| | |||| |||| ||| || || | | || | |||||| ||| Sbjct 2204 GGCCTGC-AAGCAAGCCTTGGGAGCCAAAAAGAGG--GGCCAGGCCCCGCTTCCGCCTCA 2260 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || ||||||||| |||| ||| |||||||||||||||||||||| |||||||| Sbjct 2261 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCTTTTGGGCTCCCA 2320 Query 243 CTTATTCTACACCTCTCAAGTCATTT 268 ||||| |||||||||||||||||||| Sbjct 2321 CTTATCCTACACCTCTCAAGTCATTT 2346 >seq12 Length=48899472 Score = 147 bits (162), Expect = 7e-33 Identities = 86/89 (97%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342 || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 45557122 AGTGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGTTTCTGCCAAGCCCGTTCCCTTGGC 45557181 Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGAC 371 ||||||||||||||||||||||||||||| Sbjct 45557182 TGTGGTTTCGCTAGATAGTAGATAGGGAC 45557210 Score = 75.2 bits (82), Expect = 4e-11 Identities = 88/118 (75%), Gaps = 6/118 (5%) Strand=Plus/Plus Query 6 TCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 |||||| || ||| ||| |||| || ||| |||| || |||| ||||| ||| ||| Sbjct 33013092 TCTTTTTCTATACGCGAGGTTTCCGTCCTCGCTGAGCCCATCTTACGACACTTGCATTAC 33013151 Query 66 GGTTTAACAGATGTGCCGCCC----CAGCCAAACTCCCC--ACCTGACAATGTCATCA 117 | ||||||||||| |||||| ||| || |||| || ||||||| |||||||| Sbjct 33013152 CGCTTAACAGATGTACCGCCCCATGCAGTCAGACTCTCCTAGCCTGACACTGTCATCA 33013209 >seq13 Length=26065538 Score = 89.7 bits (98), Expect = 2e-15 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 50 AGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAA 109 ||||||||||| ||| |||| |||||||| ||||||||| |||||||||| ||||||| Sbjct 24943914 AGGACACCTGCATTACCGTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAC 24943973 Query 110 TGTCATCAACCCGGATC 126 |||||||| |||||| Sbjct 24943974 TGTCATCAGAGCGGATC 24943990 >seq9 Length=97764462 Score = 86.0 bits (94), Expect = 2e-14 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388 ||| ||||||| ||||| |||| |||||| |||| |||||||||||| || || ||| Sbjct 12697685 CCCATTCCCTTTGCTGTTGTTTTAGTAGATAATAGACAGGGACAGTGGGGATTTCATTAT 12697626 Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 || |||||||| ||| || ||||||||| ||| || Sbjct 12697625 TCAATTCATGCAAGTCTGTAGTTAGATGACAAGGTAT 12697589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635117602272