Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3 470 4e-130 seq9 336 7e-90 seq7 188 2e-45 seq14 78.8 3e-12 >seq3 Length=91555047 Score = 470 bits (520), Expect = 4e-130 Identities = 420/519 (81%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | ||||| || |||| ||||| | ||||||||| Sbjct 68332995 GTACTCATTCCAATTACGGGGCCTCGTAAGAGTCCCGTATTGTTATTTTTCGTCACTACC 68332936 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 68332935 TCCCCGTGCCAGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 68332876 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 68332875 TTCTCATGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 68332816 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||||||||||||||||| ||||||| || | |||||| Sbjct 68332815 AGGCATAGCACGTACCATCGAAAGTTGATAGGGCAGACATTTGAAAGATACGTCGCCGAG 68332756 Query 240 TCAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAG--GAGCC------CCGA 289 |||| |||||||| | |||||||| ||||||||||| ||| | ||| Sbjct 68332755 GCAAGCTCATGCGATCAGCACAAAGTTATTCAGAATCACCAAGGTGAGACGGCCTTGCGA 68332696 Query 290 AGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGG--TTTTTAGC 345 | | || ||||| | ||||||||| | | | | || || ||||| | |||| | Sbjct 68332695 CCGCCATTAGTTTTGT-TCTAATAAAAGCGCTCTTCCCGTGAGGTCGGAGCTGTTTTGCC 68332637 Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405 ||||||||||||||||||| |||| |||||||| |||| | ||| ||| || ||| | Sbjct 68332636 ATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATTGTAGGATCTAAGGAACCA 68332577 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 |||||||||||||||||||||||| |||||||| | || | | | ||||||||||||| Sbjct 68332576 TAACTGATTTAATGAGCCATTCGCGGTTTCACTATGTATA-AGTCTGTACTTAGACATGC 68332518 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| Sbjct 68332517 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 68332479 >seq9 Length=97764462 Score = 336 bits (372), Expect = 7e-90 Identities = 317/398 (80%), Gaps = 16/398 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | ||||| || |||| ||||| | ||||||||| Sbjct 39112414 GTACTCATTCCAATTACGGGGCCTCGTAAGAGTCCCGTATTGTTATTTTTCGTCACTACC 39112473 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39112474 TCCCCGTGCCAGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 39112533 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 39112534 TTCTCATGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 39112593 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||||||||||||||||| ||||||| || | |||||| Sbjct 39112594 AGGCATAGCACGTACCATCGAAAGTTGATAGGGCAGACATTTGAAAGATACGTCGCCGAG 39112653 Query 240 TCAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAG--GAGCC------CCGA 289 |||| |||||||| | |||||||| ||||||||||| ||| | ||| Sbjct 39112654 GCAAGCTCATGCGATCAGCACAAAGTTATTCAGAATCACCAAGGTGAGACGGCCTTGCGA 39112713 Query 290 AGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGG--TTTTTAGC 345 | | || ||||| | ||||||||| | | | | || || ||||| | |||| | Sbjct 39112714 CCGCCATTAGTTTTGT-TCTAATAAAAGCGCTCTTCCCGTGAGGTCGGAGCTGTTTTGCC 39112772 Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG 383 ||||||||||||||||||| |||| |||||||| |||| Sbjct 39112773 ATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAG 39112810 Score = 77.0 bits (84), Expect = 1e-11 Identities = 62/74 (84%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTA 473 |||||||||||||||| ||| ||| | || | || || |||||||||||||||||| Sbjct 84470062 TTAATGAGCCATTCGCGGTTCAACTATGTATAAGTCTG-TATTTAGACATGCATGGCTTA 84470120 Query 474 ATCTTTGAGACAAG 487 |||||||||||||| Sbjct 84470121 ATCTTTGAGACAAG 84470134 >seq7 Length=40266641 Score = 188 bits (208), Expect = 2e-45 Identities = 142/166 (86%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 339 TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAA 398 |||| |||||||||||||||||||| |||| |||||||| |||| | ||| ||| || Sbjct 12782585 TTTTGCCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGATTGTAGGATCTAA 12782644 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||||||||||||||||||| |||||||| | || | | | |||||| Sbjct 12782645 GGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCACTATGTATA-AGTCTGTACTTA 12782703 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 12782704 GACATGCATGGCTTAATCTTTGAAACAAGCATATGACTACTGGCAG 12782749 >seq14 Length=46529346 Score = 78.8 bits (86), Expect = 3e-12 Identities = 78/100 (78%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 363 TTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGC 422 || |||| |||||||| |||| | ||| ||| | ||| |||||||||||||||||| Sbjct 44933528 TTGCCACAGTTATCCAAGTAGGATTGTAGGATCTCAGGAACCATAACTGATTTAATGAGC 44933469 Query 423 CATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACA 462 ||||||| |||||||| | || || | |||||||||| Sbjct 44933468 CATTCGCGGTTTCACTATGTA-TCTGTCTGTACTTAGACA 44933430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510323890944