Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq5466 288 1e-75 seq298 284 2e-74 seq19553 118 2e-24 >seq5466 Length=5474 Score = 288 bits (318), Expect = 1e-75 Identities = 221/257 (86%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | |||| |||||||||| |||||||||||||| | Sbjct 1310 GTACAAAGGGCAGGGACGTAATCAGCACGAG-TTGATGACTCATGCTTACTAGGAATT-C 1367 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| |||||||| |||||||||| |||||||||| ||||||||| ||||| |||||| Sbjct 1368 CTCGTTCAAGACCAAAAATTGCAATGGTCTATCCCCAGCACGATGAAGTTTCACAAGATT 1427 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||| |||| |||| ||||| || | |||||||||| |||||||| | Sbjct 1428 ACCCGCACCTTCCGGTGAAGGCGATATACTCGCTGGCTTCATCAGTGTAACGCGCGTGTG 1487 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||| | | || || Sbjct 1488 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATCGGCTTGAA 1547 Query 240 GGCCAT-CTCCCTCGAA 255 | | || |||||| || Sbjct 1548 GCCGATAGTCCCTCTAA 1564 >seq298 Length=76156 Score = 284 bits (314), Expect = 2e-74 Identities = 219/255 (86%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 |||||||||||||||||| ||| | |||| |||||||||| |||||||||||||| ||| Sbjct 24798 ACAAAGGGCAGGGACGTAATCAGCACGAG-TTGATGACTCATGCTTACTAGGAATT-CCT 24855 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTAC 121 |||| |||||||| |||||||||| |||||||||| ||||||||| ||||| |||||||| Sbjct 24856 CGTTCAAGACCAAAAATTGCAATGGTCTATCCCCAGCACGATGAAGTTTCACAAGATTAC 24915 Query 122 CCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 ||| |||| ||| |||| |||| ||||| || | |||||||||| |||||||| ||| Sbjct 24916 CCGCACCTTCCGGTGAAGGCGATATACTCGCTGGCTTCATCAGTGTAACGCGCGTGTGGC 24975 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGG 241 ||||||||||||||||||||||||||||||||||||||||||||||| | | || ||| Sbjct 24976 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATCGGCTTGAAGC 25035 Query 242 CCAT-CTCCCTCGAA 255 | || |||||| || Sbjct 25036 CGATAGTCCCTCTAA 25050 Score = 284 bits (314), Expect = 2e-74 Identities = 219/255 (86%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 |||||||||||||||||| ||| | |||| |||||||||| |||||||||||||| ||| Sbjct 36682 ACAAAGGGCAGGGACGTAATCAGCACGAG-TTGATGACTCATGCTTACTAGGAATT-CCT 36739 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTAC 121 |||| |||||||| |||||||||| |||||||||| ||||||||| ||||| |||||||| Sbjct 36740 CGTTCAAGACCAAAAATTGCAATGGTCTATCCCCAGCACGATGAAGTTTCACAAGATTAC 36799 Query 122 CCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 ||| |||| ||| |||| |||| ||||| || | |||||||||| |||||||| ||| Sbjct 36800 CCGCACCTTCCGGTGAAGGCGATATACTCGCTGGCTTCATCAGTGTAACGCGCGTGTGGC 36859 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGG 241 ||||||||||||||||||||||||||||||||||||||||||||||| | | || ||| Sbjct 36860 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATCGGCTTGAAGC 36919 Query 242 CCAT-CTCCCTCGAA 255 | || |||||| || Sbjct 36920 CGATAGTCCCTCTAA 36934 Score = 284 bits (314), Expect = 2e-74 Identities = 219/255 (86%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 |||||||||||||||||| ||| | |||| |||||||||| |||||||||||||| ||| Sbjct 50388 ACAAAGGGCAGGGACGTAATCAGCACGAG-TTGATGACTCATGCTTACTAGGAATT-CCT 50445 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTAC 121 |||| |||||||| |||||||||| |||||||||| ||||||||| ||||| |||||||| Sbjct 50446 CGTTCAAGACCAAAAATTGCAATGGTCTATCCCCAGCACGATGAAGTTTCACAAGATTAC 50505 Query 122 CCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 ||| |||| ||| |||| |||| ||||| || | |||||||||| |||||||| ||| Sbjct 50506 CCGCACCTTCCGGTGAAGGCGATATACTCGCTGGCTTCATCAGTGTAACGCGCGTGTGGC 50565 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGG 241 ||||||||||||||||||||||||||||||||||||||||||||||| | | || ||| Sbjct 50566 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATCGGCTTGAAGC 50625 Query 242 CCAT-CTCCCTCGAA 255 | || |||||| || Sbjct 50626 CGATAGTCCCTCTAA 50640 Score = 284 bits (314), Expect = 2e-74 Identities = 219/255 (86%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 |||||||||||||||||| ||| | |||| |||||||||| |||||||||||||| ||| Sbjct 62272 ACAAAGGGCAGGGACGTAATCAGCACGAG-TTGATGACTCATGCTTACTAGGAATT-CCT 62329 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTAC 121 |||| |||||||| |||||||||| |||||||||| ||||||||| ||||| |||||||| Sbjct 62330 CGTTCAAGACCAAAAATTGCAATGGTCTATCCCCAGCACGATGAAGTTTCACAAGATTAC 62389 Query 122 CCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 ||| |||| ||| |||| |||| ||||| || | |||||||||| |||||||| ||| Sbjct 62390 CCGCACCTTCCGGTGAAGGCGATATACTCGCTGGCTTCATCAGTGTAACGCGCGTGTGGC 62449 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGG 241 ||||||||||||||||||||||||||||||||||||||||||||||| | | || ||| Sbjct 62450 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATCGGCTTGAAGC 62509 Query 242 CCAT-CTCCCTCGAA 255 | || |||||| || Sbjct 62510 CGATAGTCCCTCTAA 62524 >seq19553 Length=8445 Score = 118 bits (130), Expect = 2e-24 Identities = 85/97 (88%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 160 ATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 219 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 8445 ATCAGTGTAACGCGCGTGTGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 8386 Query 220 CAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||||||| | | || ||| | || |||||| || Sbjct 8385 CAAACTTCCATCGGCTTGAAGCCGATAGTCCCTCTAA 8349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751839882985