Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq19553 289 5e-76 seq298 280 3e-73 >seq19553 Length=8445 Score = 289 bits (320), Expect = 5e-76 Identities = 230/274 (84%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||||||| |||||||| || ||| | ||| |||||||||||||||||||||||||| Sbjct 7680 TGCCCTTAACTGGGTGGGCGAAGGATTCGCGACGTTTACTTTGAAAAAATTAGAGTGTTC 7739 Query 100 AAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTA 159 ||||||||| | ||| | ||| | ||||||||||||||||||||||| | ||| || Sbjct 7740 AAAGCAGGCAATCGCTTGGATATCTCAGCATGGAATAATAGAATAGGACTTT-GGTCTTA 7798 Query 160 TTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATT 219 ||||||||||||| ||||| ||||||||||||||||| ||| ||||| | ||||| Sbjct 7799 TTTTGTTGGTTTCCGAGACCGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGTATT 7858 Query 220 CAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCAC 279 ||||||||||||||||||||||||||||| ||||| ||||||||||||||| || | Sbjct 7859 TCATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTACTGCGAAAGCATTTGC 7918 Query 280 CAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||||||||||||||||||||| ||||||||||| Sbjct 7919 CAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 7951 >seq298 Length=76156 Score = 280 bits (310), Expect = 3e-73 Identities = 225/269 (84%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 45 TTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 104 || |||||||| || ||| | ||| ||||||||||||||||||||||||||||||| Sbjct 25714 TTAACTGGGTGGGCGAAGGATTCGCGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 25655 Query 105 AGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 164 |||| | ||| | ||| | ||||||||||||||||||||||| | ||| ||||||| Sbjct 25654 AGGCAATCGCTTGGATATCTCAGCATGGAATAATAGAATAGGACTTT-GGTCTTATTTTG 25596 Query 165 TTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATT 224 |||||||| ||||| ||||||||||||||||| ||| ||||| | ||||| ||| Sbjct 25595 TTGGTTTCCGAGACCGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGTATTTCATT 25536 Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284 |||||||||||||||||||||||||| ||||| ||||||||||||||| || |||||| Sbjct 25535 GTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTACTGCGAAAGCATTTGCCAAGG 25476 Query 285 ATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||||||||||||||| ||||||||||| Sbjct 25475 ATGTTTTCATTAATCA-AGAACGAAAGTT 25448 Score = 280 bits (310), Expect = 3e-73 Identities = 225/269 (84%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 45 TTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 104 || |||||||| || ||| | ||| ||||||||||||||||||||||||||||||| Sbjct 37598 TTAACTGGGTGGGCGAAGGATTCGCGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 37539 Query 105 AGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 164 |||| | ||| | ||| | ||||||||||||||||||||||| | ||| ||||||| Sbjct 37538 AGGCAATCGCTTGGATATCTCAGCATGGAATAATAGAATAGGACTTT-GGTCTTATTTTG 37480 Query 165 TTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATT 224 |||||||| ||||| ||||||||||||||||| ||| ||||| | ||||| ||| Sbjct 37479 TTGGTTTCCGAGACCGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGTATTTCATT 37420 Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284 |||||||||||||||||||||||||| ||||| ||||||||||||||| || |||||| Sbjct 37419 GTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTACTGCGAAAGCATTTGCCAAGG 37360 Query 285 ATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||||||||||||||| ||||||||||| Sbjct 37359 ATGTTTTCATTAATCA-AGAACGAAAGTT 37332 Score = 280 bits (310), Expect = 3e-73 Identities = 225/269 (84%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 45 TTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 104 || |||||||| || ||| | ||| ||||||||||||||||||||||||||||||| Sbjct 51304 TTAACTGGGTGGGCGAAGGATTCGCGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 51245 Query 105 AGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 164 |||| | ||| | ||| | ||||||||||||||||||||||| | ||| ||||||| Sbjct 51244 AGGCAATCGCTTGGATATCTCAGCATGGAATAATAGAATAGGACTTT-GGTCTTATTTTG 51186 Query 165 TTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATT 224 |||||||| ||||| ||||||||||||||||| ||| ||||| | ||||| ||| Sbjct 51185 TTGGTTTCCGAGACCGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGTATTTCATT 51126 Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284 |||||||||||||||||||||||||| ||||| ||||||||||||||| || |||||| Sbjct 51125 GTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTACTGCGAAAGCATTTGCCAAGG 51066 Query 285 ATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||||||||||||||| ||||||||||| Sbjct 51065 ATGTTTTCATTAATCA-AGAACGAAAGTT 51038 Score = 280 bits (310), Expect = 3e-73 Identities = 225/269 (84%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 45 TTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 104 || |||||||| || ||| | ||| ||||||||||||||||||||||||||||||| Sbjct 63188 TTAACTGGGTGGGCGAAGGATTCGCGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 63129 Query 105 AGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 164 |||| | ||| | ||| | ||||||||||||||||||||||| | ||| ||||||| Sbjct 63128 AGGCAATCGCTTGGATATCTCAGCATGGAATAATAGAATAGGACTTT-GGTCTTATTTTG 63070 Query 165 TTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATT 224 |||||||| ||||| ||||||||||||||||| ||| ||||| | ||||| ||| Sbjct 63069 TTGGTTTCCGAGACCGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGTATTTCATT 63010 Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284 |||||||||||||||||||||||||| ||||| ||||||||||||||| || |||||| Sbjct 63009 GTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTACTGCGAAAGCATTTGCCAAGG 62950 Query 285 ATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||||||||||||||| ||||||||||| Sbjct 62949 ATGTTTTCATTAATCA-AGAACGAAAGTT 62922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914998848192