Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq298 232 3e-58 seq19553 224 4e-56 >seq298 Length=76156 Score = 232 bits (256), Expect = 3e-58 Identities = 246/321 (77%), Gaps = 20/321 (6%) Strand=Plus/Minus Query 378 CTAGGATGCTGGCGT---AATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGT 434 |||||| | |||||| ||||| | | || ||||||||| ||||||||||||||||| Sbjct 23171 CTAGGAAGTTGGCGTGCAAATGGCTTCATCCGACCCGTCTTGAAACACGGACCAAGGAGT 23112 Query 435 CTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGG 494 || || | | |||||| | | ||| ||||| | | ||| || ||||||||| ||| Sbjct 23111 CTGACGTGTGCGCGAGTCTCAGAGTGGCAAACTCTAGGGCGCAACGAAAGTGAATTTAGG 23052 Query 495 TGGGAACCC-------GTGAGGGTGCACCATCGACCGA-----TCCTGATGTCTTCGGAT 542 || || || |||||| ||| ||||| ||| | | |||| | || Sbjct 23051 TGAGATCCTCACTTCGGTGAGGC-GCATCATCGGCCGGCAAGGTTCACATGTGAAC--AT 22995 Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 | | ||| |||||| || | || |||||||||||||||||||||||||||||| |||| Sbjct 22994 G--TCCGAGCAAGAGCGTACCCGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGG 22937 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 | |||||||| |||||| |||||||||||||| |||||||||| |||||||||||||||| Sbjct 22936 GCGAAGCCAGGGGAAACCCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGT 22877 Query 663 CAAATTTGGGTATAGGGGCGA 683 |||| |||||||||||||||| Sbjct 22876 CAAACTTGGGTATAGGGGCGA 22856 Score = 232 bits (256), Expect = 3e-58 Identities = 246/321 (77%), Gaps = 20/321 (6%) Strand=Plus/Minus Query 378 CTAGGATGCTGGCGT---AATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGT 434 |||||| | |||||| ||||| | | || ||||||||| ||||||||||||||||| Sbjct 35055 CTAGGAAGTTGGCGTGCAAATGGCTTCATCCGACCCGTCTTGAAACACGGACCAAGGAGT 34996 Query 435 CTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGG 494 || || | | |||||| | | ||| ||||| | | ||| || ||||||||| ||| Sbjct 34995 CTGACGTGTGCGCGAGTCTCAGAGTGGCAAACTCTAGGGCGCAACGAAAGTGAATTTAGG 34936 Query 495 TGGGAACCC-------GTGAGGGTGCACCATCGACCGA-----TCCTGATGTCTTCGGAT 542 || || || |||||| ||| ||||| ||| | | |||| | || Sbjct 34935 TGAGATCCTCACTTCGGTGAGGC-GCATCATCGGCCGGCAAGGTTCACATGTGAAC--AT 34879 Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 | | ||| |||||| || | || |||||||||||||||||||||||||||||| |||| Sbjct 34878 G--TCCGAGCAAGAGCGTACCCGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGG 34821 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 | |||||||| |||||| |||||||||||||| |||||||||| |||||||||||||||| Sbjct 34820 GCGAAGCCAGGGGAAACCCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGT 34761 Query 663 CAAATTTGGGTATAGGGGCGA 683 |||| |||||||||||||||| Sbjct 34760 CAAACTTGGGTATAGGGGCGA 34740 Score = 232 bits (256), Expect = 3e-58 Identities = 246/321 (77%), Gaps = 20/321 (6%) Strand=Plus/Minus Query 378 CTAGGATGCTGGCGT---AATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGT 434 |||||| | |||||| ||||| | | || ||||||||| ||||||||||||||||| Sbjct 48761 CTAGGAAGTTGGCGTGCAAATGGCTTCATCCGACCCGTCTTGAAACACGGACCAAGGAGT 48702 Query 435 CTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGG 494 || || | | |||||| | | ||| ||||| | | ||| || ||||||||| ||| Sbjct 48701 CTGACGTGTGCGCGAGTCTCAGAGTGGCAAACTCTAGGGCGCAACGAAAGTGAATTTAGG 48642 Query 495 TGGGAACCC-------GTGAGGGTGCACCATCGACCGA-----TCCTGATGTCTTCGGAT 542 || || || |||||| ||| ||||| ||| | | |||| | || Sbjct 48641 TGAGATCCTCACTTCGGTGAGGC-GCATCATCGGCCGGCAAGGTTCACATGTGAAC--AT 48585 Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 | | ||| |||||| || | || |||||||||||||||||||||||||||||| |||| Sbjct 48584 G--TCCGAGCAAGAGCGTACCCGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGG 48527 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 | |||||||| |||||| |||||||||||||| |||||||||| |||||||||||||||| Sbjct 48526 GCGAAGCCAGGGGAAACCCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGT 48467 Query 663 CAAATTTGGGTATAGGGGCGA 683 |||| |||||||||||||||| Sbjct 48466 CAAACTTGGGTATAGGGGCGA 48446 Score = 232 bits (256), Expect = 3e-58 Identities = 246/321 (77%), Gaps = 20/321 (6%) Strand=Plus/Minus Query 378 CTAGGATGCTGGCGT---AATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGT 434 |||||| | |||||| ||||| | | || ||||||||| ||||||||||||||||| Sbjct 60645 CTAGGAAGTTGGCGTGCAAATGGCTTCATCCGACCCGTCTTGAAACACGGACCAAGGAGT 60586 Query 435 CTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGG 494 || || | | |||||| | | ||| ||||| | | ||| || ||||||||| ||| Sbjct 60585 CTGACGTGTGCGCGAGTCTCAGAGTGGCAAACTCTAGGGCGCAACGAAAGTGAATTTAGG 60526 Query 495 TGGGAACCC-------GTGAGGGTGCACCATCGACCGA-----TCCTGATGTCTTCGGAT 542 || || || |||||| ||| ||||| ||| | | |||| | || Sbjct 60525 TGAGATCCTCACTTCGGTGAGGC-GCATCATCGGCCGGCAAGGTTCACATGTGAAC--AT 60469 Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 | | ||| |||||| || | || |||||||||||||||||||||||||||||| |||| Sbjct 60468 G--TCCGAGCAAGAGCGTACCCGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGG 60411 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 | |||||||| |||||| |||||||||||||| |||||||||| |||||||||||||||| Sbjct 60410 GCGAAGCCAGGGGAAACCCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGT 60351 Query 663 CAAATTTGGGTATAGGGGCGA 683 |||| |||||||||||||||| Sbjct 60350 CAAACTTGGGTATAGGGGCGA 60330 Score = 224 bits (248), Expect = 4e-56 Identities = 226/291 (78%), Gaps = 17/291 (6%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| ||||||||||||||||||| || | | |||||| | | ||| ||| Sbjct 11473 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACGTGTGCGCGAGTCTCAGAGTGGCAA 11414 Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCC-------GTGAGGGTGCACCA 517 || | | ||| || ||||||||| ||||| || || |||||| ||| || Sbjct 11413 ACTCTAGGGCGCAACGAAAGTGAATTTAGGTGAGATCCTCACTTCGGTGAGGC-GCATCA 11355 Query 518 TCGACCGA-----TCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGAC 572 ||| ||| | | |||| | ||| | ||| |||||| || | || ||||| Sbjct 11354 TCGGCCGGCAAGGTTCACATGTGAAC--ATG--TCCGAGCAAGAGCGTACCCGTCGGGAC 11299 Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 ||||||||||||||||||||||||| ||||| |||||||| |||||| |||||||||||| Sbjct 11298 CCGAAAGATGGTGAACTATGCCTGAGTAGGGCGAAGCCAGGGGAAACCCTGGTGGAGGCT 11239 Query 633 CGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 11238 CGTAGCGGTTCTGACGTGCAAATCGATCGTCAAACTTGGGTATAGGGGCGA 11188 Score = 190 bits (210), Expect = 9e-46 Identities = 123/135 (91%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || | || |||||||||||||||||||||||||||||| ||||| |||| Sbjct 18935 GAGCAAGAGCGTACCCGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGCGAAG 18876 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||| |||||| |||||||||||||| |||||||||| |||||||||||||||||||| | Sbjct 18875 CCAGGGGAAACCCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAACT 18816 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 18815 TGGGTATAGGGGCGA 18801 Score = 176 bits (194), Expect = 2e-41 Identities = 145/177 (82%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||| |||||| ||||||||||| |||||| | ||||| | |||||| | ||||| Sbjct 23681 TTCGAAGAGTCGGGTTGTTTGGGATTGCAGCCCAAAATGCGTGGTAAACCCCACGTAAAG 23622 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct 23621 CTAAATATTGGCACGAGACCGATAGCGAACAAGTACCATGAGGGAAAGATGAAAAGCACT 23562 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAG 210 ||| ||||||||||||| || |||||||| ||| |||||||| || || | |||| Sbjct 23561 TTGAAAAGAGAGTTAAACAGTACGTGAAACCGTTAAAAGGGAAACGAATGGAGCCAG 23505 Score = 176 bits (194), Expect = 2e-41 Identities = 145/177 (82%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||| |||||| ||||||||||| |||||| | ||||| | |||||| | ||||| Sbjct 35565 TTCGAAGAGTCGGGTTGTTTGGGATTGCAGCCCAAAATGCGTGGTAAACCCCACGTAAAG 35506 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct 35505 CTAAATATTGGCACGAGACCGATAGCGAACAAGTACCATGAGGGAAAGATGAAAAGCACT 35446 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAG 210 ||| ||||||||||||| || |||||||| ||| |||||||| || || | |||| Sbjct 35445 TTGAAAAGAGAGTTAAACAGTACGTGAAACCGTTAAAAGGGAAACGAATGGAGCCAG 35389 Score = 176 bits (194), Expect = 2e-41 Identities = 145/177 (82%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||| |||||| ||||||||||| |||||| | ||||| | |||||| | ||||| Sbjct 49271 TTCGAAGAGTCGGGTTGTTTGGGATTGCAGCCCAAAATGCGTGGTAAACCCCACGTAAAG 49212 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct 49211 CTAAATATTGGCACGAGACCGATAGCGAACAAGTACCATGAGGGAAAGATGAAAAGCACT 49152 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAG 210 ||| ||||||||||||| || |||||||| ||| |||||||| || || | |||| Sbjct 49151 TTGAAAAGAGAGTTAAACAGTACGTGAAACCGTTAAAAGGGAAACGAATGGAGCCAG 49095 Score = 176 bits (194), Expect = 2e-41 Identities = 145/177 (82%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||| |||||| ||||||||||| |||||| | ||||| | |||||| | ||||| Sbjct 61155 TTCGAAGAGTCGGGTTGTTTGGGATTGCAGCCCAAAATGCGTGGTAAACCCCACGTAAAG 61096 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct 61095 CTAAATATTGGCACGAGACCGATAGCGAACAAGTACCATGAGGGAAAGATGAAAAGCACT 61036 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAG 210 ||| ||||||||||||| || |||||||| ||| |||||||| || || | |||| Sbjct 61035 TTGAAAAGAGAGTTAAACAGTACGTGAAACCGTTAAAAGGGAAACGAATGGAGCCAG 60979 >seq19553 Length=8445 Score = 224 bits (248), Expect = 4e-56 Identities = 226/291 (78%), Gaps = 17/291 (6%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| ||||||||||||||||||| || | | |||||| | | ||| ||| Sbjct 4386 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACGTGTGCGCGAGTCTCAGAGTGGCAA 4327 Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCC-------GTGAGGGTGCACCA 517 || | | ||| || ||||||||| ||||| || || |||||| ||| || Sbjct 4326 ACTCTAGGGCGCAACGAAAGTGAATTTAGGTGAGATCCTCACTTCGGTGAGGC-GCATCA 4268 Query 518 TCGACCGA-----TCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGAC 572 ||| ||| | | |||| | ||| | ||| |||||| || | || ||||| Sbjct 4267 TCGGCCGGCAAGGTTCACATGTGAAC--ATG--TCCGAGCAAGAGCGTACCCGTCGGGAC 4212 Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 ||||||||||||||||||||||||| ||||| |||||||| |||||| |||||||||||| Sbjct 4211 CCGAAAGATGGTGAACTATGCCTGAGTAGGGCGAAGCCAGGGGAAACCCTGGTGGAGGCT 4152 Query 633 CGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 4151 CGTAGCGGTTCTGACGTGCAAATCGATCGTCAAACTTGGGTATAGGGGCGA 4101 Score = 176 bits (194), Expect = 2e-41 Identities = 145/177 (82%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||| |||||| ||||||||||| |||||| | ||||| | |||||| | ||||| Sbjct 5349 TTCGAAGAGTCGGGTTGTTTGGGATTGCAGCCCAAAATGCGTGGTAAACCCCACGTAAAG 5290 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct 5289 CTAAATATTGGCACGAGACCGATAGCGAACAAGTACCATGAGGGAAAGATGAAAAGCACT 5230 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAG 210 ||| ||||||||||||| || |||||||| ||| |||||||| || || | |||| Sbjct 5229 TTGAAAAGAGAGTTAAACAGTACGTGAAACCGTTAAAAGGGAAACGAATGGAGCCAG 5173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079528550450