Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq19553 168 7e-40 seq298 168 7e-40 >seq19553 Length=8445 Score = 168 bits (186), Expect = 7e-40 Identities = 148/182 (81%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 9 GACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCA 68 ||| ||||||||||||||||||||| ||||||||||||| | ||| | ||| | | || Sbjct 7710 GACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCAATCGCTTGGATATCTCAGCA 7769 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||||||||||||||||||| | ||| |||||||| |||||| ||||| |||||| Sbjct 7770 TGGAATAATAGAATAGGAC-TTTGGTCTTATTTTGTTGGTTTCCGAGACCG-AAGTAATG 7827 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || |||| ||| ||| ||||| | ||||| ||||||| ||||||||||||||||||| Sbjct 7828 ATTAATAGGGACAGTTGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTT 7887 Query 189 AT 190 || Sbjct 7888 AT 7889 >seq298 Length=76156 Score = 168 bits (186), Expect = 7e-40 Identities = 148/182 (81%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 9 GACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCA 68 ||| ||||||||||||||||||||| ||||||||||||| | ||| | ||| | | || Sbjct 25689 GACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCAATCGCTTGGATATCTCAGCA 25630 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||||||||||||||||||| | ||| |||||||| |||||| ||||| |||||| Sbjct 25629 TGGAATAATAGAATAGGAC-TTTGGTCTTATTTTGTTGGTTTCCGAGACCG-AAGTAATG 25572 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || |||| ||| ||| ||||| | ||||| ||||||| ||||||||||||||||||| Sbjct 25571 ATTAATAGGGACAGTTGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTT 25512 Query 189 AT 190 || Sbjct 25511 AT 25510 Score = 168 bits (186), Expect = 7e-40 Identities = 148/182 (81%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 9 GACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCA 68 ||| ||||||||||||||||||||| ||||||||||||| | ||| | ||| | | || Sbjct 37573 GACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCAATCGCTTGGATATCTCAGCA 37514 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||||||||||||||||||| | ||| |||||||| |||||| ||||| |||||| Sbjct 37513 TGGAATAATAGAATAGGAC-TTTGGTCTTATTTTGTTGGTTTCCGAGACCG-AAGTAATG 37456 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || |||| ||| ||| ||||| | ||||| ||||||| ||||||||||||||||||| Sbjct 37455 ATTAATAGGGACAGTTGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTT 37396 Query 189 AT 190 || Sbjct 37395 AT 37394 Score = 168 bits (186), Expect = 7e-40 Identities = 148/182 (81%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 9 GACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCA 68 ||| ||||||||||||||||||||| ||||||||||||| | ||| | ||| | | || Sbjct 51279 GACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCAATCGCTTGGATATCTCAGCA 51220 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||||||||||||||||||| | ||| |||||||| |||||| ||||| |||||| Sbjct 51219 TGGAATAATAGAATAGGAC-TTTGGTCTTATTTTGTTGGTTTCCGAGACCG-AAGTAATG 51162 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || |||| ||| ||| ||||| | ||||| ||||||| ||||||||||||||||||| Sbjct 51161 ATTAATAGGGACAGTTGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTT 51102 Query 189 AT 190 || Sbjct 51101 AT 51100 Score = 168 bits (186), Expect = 7e-40 Identities = 148/182 (81%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 9 GACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCA 68 ||| ||||||||||||||||||||| ||||||||||||| | ||| | ||| | | || Sbjct 63163 GACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCAATCGCTTGGATATCTCAGCA 63104 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||||||||||||||||||| | ||| |||||||| |||||| ||||| |||||| Sbjct 63103 TGGAATAATAGAATAGGAC-TTTGGTCTTATTTTGTTGGTTTCCGAGACCG-AAGTAATG 63046 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || |||| ||| ||| ||||| | ||||| ||||||| ||||||||||||||||||| Sbjct 63045 ATTAATAGGGACAGTTGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTT 62986 Query 189 AT 190 || Sbjct 62985 AT 62984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511890984160