Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq19553 118 2e-24 seq298 118 2e-24 seq1715 105 1e-20 >seq19553 Length=8445 Score = 118 bits (130), Expect = 2e-24 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || |||| | |||| ||||| || |||| ||||| | Sbjct 1952 GTACGAGAGGAACCGTTGGAT-CAGAC-ATTTGGCATTTGCACTTGCCTGAAAAGGCAAT 1895 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||||||||||||||||||||| ||||||||| || | Sbjct 1894 GGTGCGAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGCCAGAATCCAGGCTA 1835 Query 121 GAACGGG 127 ||||||| Sbjct 1834 GAACGGG 1828 >seq298 Length=76156 Score = 118 bits (130), Expect = 2e-24 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || |||| | |||| ||||| || |||| ||||| | Sbjct 2305 GTACGAGAGGAACCGTTGGAT-CAGAC-ATTTGGCATTTGCACTTGCCTGAAAAGGCAAT 2248 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||||||||||||||||||||| ||||||||| || | Sbjct 2247 GGTGCGAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGCCAGAATCCAGGCTA 2188 Query 121 GAACGGG 127 ||||||| Sbjct 2187 GAACGGG 2181 Score = 118 bits (130), Expect = 2e-24 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || |||| | |||| ||||| || |||| ||||| | Sbjct 9043 GTACGAGAGGAACCGTTGGAT-CAGAC-ATTTGGCATTTGCACTTGCCTGAAAAGGCAAT 8986 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||||||||||||||||||||| ||||||||| || | Sbjct 8985 GGTGCGAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGCCAGAATCCAGGCTA 8926 Query 121 GAACGGG 127 ||||||| Sbjct 8925 GAACGGG 8919 Score = 118 bits (130), Expect = 2e-24 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || |||| | |||| ||||| || |||| ||||| | Sbjct 11665 GTACGAGAGGAACCGTTGGAT-CAGAC-ATTTGGCATTTGCACTTGCCTGAAAAGGCAAT 11608 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||||||||||||||||||||| ||||||||| || | Sbjct 11607 GGTGCGAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGCCAGAATCCAGGCTA 11548 Query 121 GAACGGG 127 ||||||| Sbjct 11547 GAACGGG 11541 Score = 118 bits (130), Expect = 2e-24 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || |||| | |||| ||||| || |||| ||||| | Sbjct 74711 GTACGAGAGGAACCGTTGGAT-CAGAC-ATTTGGCATTTGCACTTGCCTGAAAAGGCAAT 74654 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||||||||||||||||||||| ||||||||| || | Sbjct 74653 GGTGCGAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGCCAGAATCCAGGCTA 74594 Query 121 GAACGGG 127 ||||||| Sbjct 74593 GAACGGG 74587 Score = 105 bits (116), Expect = 1e-20 Identities = 97/120 (81%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 4 CGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCC 63 |||||||||||| | || |||| | |||| ||||| || |||| ||||| || Sbjct 118 CGAGAGGAACCGTTGGAT-CAGAC-ATTTGGCATTTGCACTTGCCTGAAAAGGCAATGGT 61 Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 |||||||||||||||| |||||||||||||||||||||||| ||||||||| || |||| Sbjct 60 GCGAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGCCAGAATCCAGGCTAGAA 1 >seq1715 Length=19417 Score = 105 bits (116), Expect = 1e-20 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 || || | ||||||| | || |||| | |||| ||||| || |||| ||||| | Sbjct 16165 GTCCGCGCGGAACCGTTGGAT-CAGAC-ATTTGGCATTTGCCCTTGCCTGAAAAGGCAAT 16108 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||||||||||||||||||||| ||||||||| || | Sbjct 16107 GGTGCGAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGCCAGAATCCAGGCTA 16048 Query 121 GAACGGG 127 ||||||| Sbjct 16047 GAACGGG 16041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819025574656