Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq129494 150 3e-34 seq132849 143 5e-32 seq132846 143 5e-32 seq112659 132 9e-29 seq129495 116 7e-24 seq169901 98.7 2e-18 seq169900 98.7 2e-18 seq117692 98.7 2e-18 seq23490 98.7 2e-18 seq236782 89.7 1e-15 seq25612 80.6 5e-13 seq117693 77.0 6e-12 seq235201 73.4 8e-11 >seq129494 Length=304 Score = 150 bits (166), Expect = 3e-34 Identities = 195/262 (74%), Gaps = 8/262 (3%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG--CCG 61 ||| || |||| |||||||||||| |||| ||| | ||||||| |||||||| ||| Sbjct 303 CCCCAGGCGGGGAGTGAAATAGACC-TGAAACCGTGAGCCTACAGAAGGTCGGAGTCCCG 245 Query 62 AGTGATTCGG--TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAG 119 | | |||| ||||||||||||| ||| | ||||| || || ||| | || || Sbjct 244 ACTTGGTCGGGATGACGGCGTGCCTATTGAAGAATGATCCGGGGACTTACT-GTATGGAG 186 Query 120 CGAGGTTAAGGG-CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG 178 |||||||||||| || || ||| ||||| || ||||||||| | ||||||||||| Sbjct 185 CGAGGTTAAGGGACTGTAGTTCCGG-AGCCGTAGCGAAAGCGAGTTTGAACAGGGCGACC 127 Query 179 AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238 |||| | ||||| ||||||| |||| ||||||| | |||||||||| || | Sbjct 126 AGTTCCATGTAGTAGACTCGAAACCGGGTGAGCTACCCATGGCCAGGTTGAAGGTTCGTT 67 Query 239 AACGCGTGATGGAGGACCGAAC 260 |||||| ||||||||||||| Sbjct 66 AACGCGAACTGGAGGACCGAAC 45 >seq132849 Length=378 Score = 143 bits (158), Expect = 5e-32 Identities = 106/124 (85%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 196 GCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGAC 255 |||||||| ||||||||||||| | ||||||||||||| |||||| | |||||||||| Sbjct 378 GCGAAACCGTGTGATCTACCCATGGGCAGGTTGAAGTCTTGGTAACACAAGATGGAGGAC 319 Query 256 CGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATC 315 |||||| | | |||||||||| | | ||||||| | |||||||||||||||||||||| Sbjct 318 CGAACCAGGGAGCGTTGAAAAGCTCTTGGATGACCTGTGGGTAGGGGTGAAAGGCCAATC 259 Query 316 AAAC 319 |||| Sbjct 258 AAAC 255 >seq132846 Length=404 Score = 143 bits (158), Expect = 5e-32 Identities = 106/124 (85%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 196 GCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGAC 255 |||||||| ||||||||||||| | ||||||||||||| |||||| | |||||||||| Sbjct 404 GCGAAACCGTGTGATCTACCCATGGGCAGGTTGAAGTCTTGGTAACACAAGATGGAGGAC 345 Query 256 CGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATC 315 |||||| | | |||||||||| | | ||||||| | |||||||||||||||||||||| Sbjct 344 CGAACCAGGGAGCGTTGAAAAGCTCTTGGATGACCTGTGGGTAGGGGTGAAAGGCCAATC 285 Query 316 AAAC 319 |||| Sbjct 284 AAAC 281 >seq112659 Length=266 Score = 132 bits (146), Expect = 9e-29 Identities = 197/273 (72%), Gaps = 11/273 (4%) Strand=Plus/Minus Query 30 TGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTGACGGCGTGCCTTTTGC 89 |||| ||| | | ||||||| || |||||| || |||||| |||| ||||||| Sbjct 266 TGAAACCGTGTACGTACAAGCAGTAGGAGCCCTTCGAG--GGTGACTGCGTACCTTTTGT 209 Query 90 ATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTTCAGGCCCGTTAGCCG 149 |||||| | | ||| ||| | | ||||||||||| | || || |||||| Sbjct 208 ATAATGGGTCAGCGACTTA-TATTTTGTAGCGAGGTTAACCGTTTAGGG-----TAGCCG 155 Query 150 AAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTG-GTGGCGCTAGACGCGAAACCTTGT 207 || ||||||||| ||||| |||||| ||||| |||| | ||||| |||| | | Sbjct 154 TAGCGAAAGCGAGTCTTAAATGGGCGATTCAGTTGCGTGGAG-TAGACCCGAAGCGGGAT 96 Query 208 GATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAA 267 |||||||||| | |||| ||||| |||||||| || | || ||| |||||||||| | Sbjct 95 GATCTACCCATGGCCAGGGTGAAGGTGCGGTAACACGCGCTGAAGGCCCGAACCGGTTGA 36 Query 268 CGTTGAAAAGTTTTCGGATGACTCGCGGGTAGG 300 |||||||| | ||||||||| | ||||||| Sbjct 35 GGTTGAAAACTCTTCGGATGAGCTGTGGGTAGG 3 >seq129495 Length=251 Score = 116 bits (128), Expect = 7e-24 Identities = 142/190 (75%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 ||||||||||||| ||| | ||||| || || ||| | || |||||||||||||| Sbjct 232 TGACGGCGTGCCTATTGAAGAATGATCCGGGGACTTACT-GTATGGAGCGAGGTTAAGGG 174 Query 132 -CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 || || ||| ||||| || ||||||||| | ||||||||||| |||| | Sbjct 173 ACTGTAGTTCCGG-AGCCGTAGCGAAAGCGAGTTTGAACAGGGCGACCAGTTCCATGTAG 115 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||| ||||||| | |||||||||| || ||||||| ||| Sbjct 114 TAGACTCGAAACCGGGTGAGCTACCCATGGCCAGGTTGAAGGTTCGTTAACGCGAACTGG 55 Query 251 AGGACCGAAC 260 |||||||||| Sbjct 54 AGGACCGAAC 45 >seq169901 Length=451 Score = 98.7 bits (108), Expect = 2e-18 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 145 AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCT 204 ||||| || ||||||||| | ||||||||||| |||| | ||||| ||||||| Sbjct 20 AGCCGTAGCGAAAGCGAGTTTGAACAGGGCGACCAGTTCCATGTAGTAGACCCGAAACCG 79 Query 205 TGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAAC-CGG 263 |||| ||||||| | ||| |||||| || ||||||| || |||| ||||| || Sbjct 80 AGTGAGCTACCCATGGCCAGATTGAAGGTTCGTTAACGCGGACTGAAGGATCGAACTCGT 139 Query 264 TAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGG 323 || ||||| | |||||| | |||||| ||||||| || |||| |||| || Sbjct 140 GGCTAGTACAAAAG-CCTGGGATGAGCTGTGGGTAGAGGTGAAATGCTAATCGAACTCGG 198 Query 324 AAATAGCTCGT 334 |||||||| || Sbjct 199 AAATAGCTGGT 209 >seq169900 Length=477 Score = 98.7 bits (108), Expect = 2e-18 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 145 AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCT 204 ||||| || ||||||||| | ||||||||||| |||| | ||||| ||||||| Sbjct 20 AGCCGTAGCGAAAGCGAGTTTGAACAGGGCGACCAGTTCCATGTAGTAGACCCGAAACCG 79 Query 205 TGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAAC-CGG 263 |||| ||||||| | ||| |||||| || ||||||| || |||| ||||| || Sbjct 80 AGTGAGCTACCCATGGCCAGATTGAAGGTTCGTTAACGCGGACTGAAGGATCGAACTCGT 139 Query 264 TAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGG 323 || ||||| | |||||| | |||||| ||||||| || |||| |||| || Sbjct 140 GGCTAGTACAAAAG-CCTGGGATGAGCTGTGGGTAGAGGTGAAATGCTAATCGAACTCGG 198 Query 324 AAATAGCTCGT 334 |||||||| || Sbjct 199 AAATAGCTGGT 209 >seq117692 Length=208 Score = 98.7 bits (108), Expect = 2e-18 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 102 CGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGA 161 ||||||| | || | ||| |||||||| ||||||| || ||||| || |||| ||| Sbjct 1 CGAGTTA-TGGTAAGTAGCAAGGTTAAGAACTTCAGGTTCGA-AGCCGTAGAGAAATCGA 58 Query 162 GCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAG 221 | ||||| ||||| |||| | || ||||| ||||||| | || ||| ||| ||| Sbjct 59 GTCTTAAATGGGCGTTTAGTTACTTGCTGTAGACCCGAAACCGGGCGACCTATCCATGAG 118 Query 222 CAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTT 281 |||| ||||| |||| | |||||| ||||||| |||||||||||| Sbjct 119 CAGGGTGAAGCAAAAGTAAAATTTTGTGGAGGCCCGAACCCACGTACGTTGAAAAGTGCG 178 Query 282 CGGATGACTCGCGGGTAGGGGTGAAA 307 |||||||| | || ||| ||||||| Sbjct 179 GGGATGACTTGTGGATAGCGGTGAAA 204 >seq23490 Length=210 Score = 98.7 bits (108), Expect = 2e-18 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 84 TTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTTCAGGCCCGT 143 ||||||||||||||||| ||||||| | | |||| ||||||| |||| || Sbjct 210 TTTTGCATAATGAGCCTGCGAGTTAAT-TTGTACAGCAAGGTTAA--GCTTTTAGC---G 157 Query 144 TAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACC 203 ||||||||| ||||||||| | || || ||| ||||| | ||||| |||| || Sbjct 156 TAGCCGAAGCGAAAGCGAGTGTGAATAGCGCGTTTAGTTGTACGGATTAGACCCGAAGCC 97 Query 204 TTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGG 263 | |||||||| ||| ||||| | |||| | ||||| | |||||| | ||||| Sbjct 96 TGGTGATCTATCCATGAGCACGGTGAATCTCCTGTAACAGGGAGTGGAGGCCGGAACCCT 37 Query 264 TAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAG 299 | | | |||||| | || |||||||| | || ||| Sbjct 36 TTCATGCTGAAAAATGTTGGGATGACTTGTGGATAG 1 >seq236782 Length=209 Score = 89.7 bits (98), Expect = 1e-15 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| | | | ||| |||||| |||| | ||| Sbjct 189 TAGACTCGAAACCAAGTGATCTAGCTATGGACAGATTGAAGGTATAGTAAAATATACTGG 130 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 |||| |||||| || | |||| || | | |||||| | || |||||||||||||| Sbjct 129 AGGATCGAACCTGTTACTGTTGCAATAGTATAGGATGATCTGTGGTTAGGGGTGAAAGGC 70 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 |||||||||| |||||||||| || Sbjct 69 CAATCAAACTTGGAAATAGCTAGT 46 >seq25612 Length=393 Score = 80.6 bits (88), Expect = 5e-13 Identities = 104/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| |||| ||| ||||||| | | ||||||||| |||| | | ||| Sbjct 4 TAGACCCGAAGCCTGTTGATCTATTTATGGTCAGGTTGAAAGTAAAGTAAAACTTACTGG 63 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 |||||||||| || |||||||||||| || ||||| | | |||||||||||||| Sbjct 64 AGGACCGAACTCGTTGACGTTGAAAAGTCTTGAGATGAACTGTGAATAGGGGTGAAAGGC 123 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 |||||||| || |||||| || Sbjct 124 CAATCAAAACAGGCGATAGCTGGT 147 >seq117693 Length=242 Score = 77.0 bits (84), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| ||||||||||||||||| | | ||| || |||||| | | Sbjct 218 AGGGGAGTGAAATAGACCCTGAAACTTTATACTGTCAAAGAGTAGGAGCCCTTAGG---G 162 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| | ||||| | || | || ||||||||| || || ||||||||| Sbjct 161 GTGACTGCGTACTTTTTGTAGAACGGACCAACGAGTTAGCTGTATATGGCAAGGTTAAGG 102 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC-GAGTTGGTGGCG 189 | | ||| ||||| |||||||||||| || || ||| |||| ||| || Sbjct 101 AAGTGAAATCCGA-AGCCGCAGTGAAAGCGAGGCTGAATAGGCCGACTTAGTCATATGCA 43 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG 231 |||||| |||||| |||| || |||| ||||||| ||||| Sbjct 42 CTAGACCCGAAACTAGGTGAGCTTCCCATGAGCAGGCTGAAG 1 >seq235201 Length=1071 Score = 73.4 bits (80), Expect = 8e-11 Identities = 99/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 197 CGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACC 256 ||||||| |||||||| | |||||| |||||| ||| | | |||| || | Sbjct 526 CGAAACCAAGTGATCTAGTTATGAGCAGTTTGAAGCTTTCTTAATAGGGGGTGGAAGAAC 467 Query 257 GAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCA 316 |||||||||| || | ||| ||||||| |||| | || | ||||| | | || |||| Sbjct 466 GAACCGGTAATTGTGGCAAAAATTTCGGAGGACTTGTGGCTGGGGGTAAGAAGCTAATCG 407 Query 317 AACTGGGAAATAGCTCGT 334 |||| || ||||||| || Sbjct 406 AACTTGGTAATAGCTGGT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 970338543616