Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq100796 246 5e-63 seq170137 226 4e-57 seq24980 196 7e-48 >seq100796 Length=265 Score = 246 bits (272), Expect = 5e-63 Identities = 193/228 (85%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 231 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 174 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||| | | |||||||| |||||||||||| ||||| ||| |||||| Sbjct 173 CTCGTTCAAGATCGAAAATTGCAAGGATCTATCCCCAGCACGACCGCGTTTGCAAGATTG 114 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||| |||| |||| |||| |||| || |||||||||||||||||||| Sbjct 113 CCCGCGCCTGCCGGCGAAGGAAGGGCACTCTCTGGCACGGTCAGTGTAGCGCGCGTGCGG 54 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 53 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 6 >seq170137 Length=630 Score = 226 bits (250), Expect = 4e-57 Identities = 183/219 (84%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| | Sbjct 10 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGTCTCGCGCTTACTAGGAATT-C 67 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||| | | |||||||| |||||||||||| ||||| ||| |||||| Sbjct 68 CTCGTTCAAGATCGAAAATTGCAAGGATCTATCCCCAGCACGACCGCGTTTGCAAGATTG 127 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||| |||| |||| |||| |||| || |||||||||||||||||||| Sbjct 128 CCCGCGCCTGCCGGCGAAGGAAGGGCACTCTCTGGCACGGTCAGTGTAGCGCGCGTGCGG 187 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 219 ||||||||||||||||||||||||||||||||||||||| Sbjct 188 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 226 >seq24980 Length=237 Score = 196 bits (216), Expect = 7e-48 Identities = 167/201 (83%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| |||||||| ||||||||||| |||| ||| ||| | Sbjct 197 GTACAAAGGGCAGGGACGTAATCAGCGCGAGCT-GATGACTCGCGATTACGAGGCATT-C 140 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||||||| |||||||| ||||||||| ||||| | | ||| |||||| Sbjct 139 CTCGTTCAAGACCAAGAATTGCAAGAGTCTATCCCCGTCACGGGGCACTTTTCAAGATTG 80 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||| ||| | | ||||| | | | ||||||||||||||||||| Sbjct 79 CCCGGGCCTGTCGGCCCAGG-GCGA-ACTCGCTTCGTGCGCCAGTGTAGCGCGCGTGCGG 22 Query 181 CCCAGAACATCTAAGGGCATC 201 ||||| ||||||||||||||| Sbjct 21 CCCAGGACATCTAAGGGCATC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750156691020