Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq215684 241 2e-61 seq170138 228 1e-57 seq215685 104 4e-20 seq7407 84.2 4e-14 seq215686 78.8 2e-12 >seq215684 Length=705 Score = 241 bits (266), Expect = 2e-61 Identities = 225/285 (79%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| ||| |||||| |||| || || |||||||||||||||||||||||||| Sbjct 152 TGCTCTTAGCTGAGTGTGCGCGGGATCCGCCACGTTTACTTTGAAAAAATTAGAGTGTTC 211 Query 100 AAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT--- 156 |||||||||| ||| |||||| | ||||||||||||| ||||||||| | | || Sbjct 212 AAAGCAGGCCGGGGCTTGAATACGTAAGCATGGAATAATGGAATAGGACTTTGGTTTGTT 271 Query 157 ---CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||||||||||| |||||| ||||||||| | || || ||| ||||| | Sbjct 272 GTGCTATTTTGTTGGTTTCCGGGACCGAAGTAATGATTGAGAGAGACAGTTGGGGGCATT 331 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||||| ||||||||||||||||||||||||| ||||| |||| ||||||||| Sbjct 332 CGTATTTCGCTGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGGACTAGTGCGAAAGC 391 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||| |||||||| ||||||| ||||||||||||| || Sbjct 392 ATTTGCCAAGAATGTTTTCGTTAATCA-AGAACGAAAGTTAGAGG 435 >seq170138 Length=482 Score = 228 bits (252), Expect = 1e-57 Identities = 216/275 (79%), Gaps = 7/275 (3%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| ||| |||||| |||| || || |||||||||||||||||||||||||| Sbjct 274 TGCTCTTAGCTGAGTGTGCGCGGGATCCGCCACGTTTACTTTGAAAAAATTAGAGTGTTC 215 Query 100 AAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT--- 156 |||||||||| ||| |||||| | ||||||||||||| ||||||||| | | || Sbjct 214 AAAGCAGGCCGGGGCTTGAATACGTAAGCATGGAATAATGGAATAGGACTTTGGTTTGTT 155 Query 157 ---CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||||||||||| |||||| ||||||||| | || || ||| ||||| | Sbjct 154 GTGCTATTTTGTTGGTTTCCGGGACCGAAGTAATGATTGAGAGAGACAGTTGGGGGCATT 95 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||||| ||||||||||||||||||||||||| ||||| |||| ||||||||| Sbjct 94 CGTATTTCGCTGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGGACTAGTGCGAAAGC 35 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || ||||| |||||||| ||||||| |||||| Sbjct 34 ATTTGCCAAGAATGTTTTCGTTAATCA-AGAACGA 1 >seq215685 Length=346 Score = 104 bits (114), Expect = 4e-20 Identities = 104/131 (79%), Gaps = 8/131 (6%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT--TTTACTTTGAAAAAATTAGAGTGT 97 ||||||| |||||||| ||||||| | | || |||||||||||||||||||||||| Sbjct 218 TGCCCTTAACTGGGTG-GCCGGGGGCACCCGCCTCGTTTACTTTGAAAAAATTAGAGTGT 276 Query 98 TCAAAGCAGGC----CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCG 153 ||||||||||| | || ||||| ||||||||||||||||||||| | || Sbjct 277 TCAAAGCAGGCTGAAGCTGGCCTGAATAATGGTGCATGGAATAATAGAATAGGATCT-CG 335 Query 154 GTTCTATTTTG 164 ||||||||||| Sbjct 336 GTTCTATTTTG 346 >seq7407 Length=208 Score = 84.2 bits (92), Expect = 4e-14 Identities = 85/109 (78%), Gaps = 5/109 (5%) Strand=Plus/Plus Query 42 CCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAA 101 ||||||| |||||| | | | | ||| ||||||||||||| |||||||| ||||| | Sbjct 94 CCCTTCAATGGGTGAGGCAGTTTGGCAGAACTTTTACTTTGAGAAAATTAGGGTGTTTCA 153 Query 102 AGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGA 147 ||||||| | || | |||||| |||||||||||||| ||||||| Sbjct 154 AGCAGGC--TAGCGCCGTGAATACTGCAGCATGGAATAATAAAATAGGA 200 >seq215686 Length=288 Score = 78.8 bits (86), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 3/72 (4%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT--TTTACTTTGAAAAAATTAGAGTGT 97 ||||||| |||||||| ||||||| | | || |||||||||||||||||||||||| Sbjct 218 TGCCCTTAACTGGGTG-GCCGGGGGCACCCGCCTCGTTTACTTTGAAAAAATTAGAGTGT 276 Query 98 TCAAAGCAGGCC 109 |||||||||||| Sbjct 277 TCAAAGCAGGCC 288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 912884287744