Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq217982 253 8e-65 seq215694 203 1e-49 seq215696 188 3e-45 seq215695 188 3e-45 seq86337 149 3e-33 seq215693 147 9e-33 seq86338 147 9e-33 seq54214 136 2e-29 seq7941 136 2e-29 seq7619 107 8e-21 seq61065 95.1 5e-17 >seq217982 Length=937 Score = 253 bits (280), Expect = 8e-65 Identities = 250/326 (77%), Gaps = 38/326 (12%) Strand=Plus/Plus Query 394 ATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGT 453 |||| | || || ||||||||| |||||||||||||||||||||||| | |||||| | Sbjct 328 ATGGGTCTATCCGACCCGTCTTGTAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCT 387 Query 454 TTGGGTGT--CAAACCCGTGCGCGTAATGAAAGTGAACG--------------GAGGTGG 497 | ||||| ||||||| ||| |||||||||||| | |||||| Sbjct 388 TAGGGTGAGCCAAACCCCGAGGCGCAATGAAAGTGAAAGCGGTTTCGGCCGCCGAGGTGA 447 Query 498 GAACC-----------------CGTGAGGGTGCACCATCGACCGATCCTGATGT---CTT 537 || || || | || ||| |||||||||| ||| | | ||| Sbjct 448 GACCCGCACTGCCGCTGCGCGGCGGGGCGGCGCATCATCGACCGA-CCTATTCTACTCTT 506 Query 538 CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGA 597 ||| || ||||||| ||||| | ||||||||||||||||||||||||||||||||||| Sbjct 507 AGGAAGG-TTTGAGTGAGAGCGTGTCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGA 565 Query 598 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCG 657 ||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| Sbjct 566 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCG 625 Query 658 ATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||||||||||||||||||| Sbjct 626 ATCGTCGAATTTGGGTATAGGGGCGA 651 >seq215694 Length=950 Score = 203 bits (224), Expect = 1e-49 Identities = 152/177 (86%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || | ||||| |||||| |||||||||||||||||| | ||||||| |||||| | | Sbjct 237 GATGCGCTTTCGAAGAGTCGGGTTGTTTGGGAATGCAGCCCAAAATGGGTGGTAAACTCC 178 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 ||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||||| Sbjct 177 ATCTAAAGCTAAATATTGGCGTGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGA 118 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||| ||||||||||||||||| ||||| || |||||||| ||||||| ||||| || Sbjct 117 AAAGAACTTTGGAAAGAGAGTT-AAAAGTACCTGAAATTGCTGAAAGGAAAGCGTTT 62 >seq215696 Length=783 Score = 188 bits (208), Expect = 3e-45 Identities = 146/174 (84%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || | ||||| |||||| |||||||||||||||||| | ||||||| |||||| | | Sbjct 741 GATGCGCTTTCGAAGAGTCGGGTTGTTTGGGAATGCAGCCCAAAATGGGTGGTAAACTCC 682 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 ||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||||| Sbjct 681 ATCTAAAGCTAAATATTGGCGTGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGA 622 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||| ||||||||||||| || |||||||| || | |||||| || Sbjct 621 AAAGAACTTTGAAAAGAGAGTTAAAGAGTACGTGAAACCGTCTAGAGGGAAACG 568 Score = 87.8 bits (96), Expect = 7e-15 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 394 ATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGT 453 |||| | || || ||||||||| |||||||||||||||||||||||| | |||||| | Sbjct 174 ATGGGTCTATCCGACCCGTCTTGTAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCT 115 Query 454 TTGGGT--GTCAAACCCGTGCGCGTAATGAAAGTGAA 488 | |||| | ||||||| ||| |||||||||||| Sbjct 114 TAGGGTGAGCCAAACCCCGAGGCGCAATGAAAGTGAA 78 >seq215695 Length=891 Score = 188 bits (208), Expect = 3e-45 Identities = 146/174 (84%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || | ||||| |||||| |||||||||||||||||| | ||||||| |||||| | | Sbjct 741 GATGCGCTTTCGAAGAGTCGGGTTGTTTGGGAATGCAGCCCAAAATGGGTGGTAAACTCC 682 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 ||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||||| Sbjct 681 ATCTAAAGCTAAATATTGGCGTGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGA 622 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||| ||||||||||||| || |||||||| || | |||||| || Sbjct 621 AAAGAACTTTGAAAAGAGAGTTAAAGAGTACGTGAAACCGTCTAGAGGGAAACG 568 Score = 87.8 bits (96), Expect = 7e-15 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 394 ATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGT 453 |||| | || || ||||||||| |||||||||||||||||||||||| | |||||| | Sbjct 174 ATGGGTCTATCCGACCCGTCTTGTAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCT 115 Query 454 TTGGGT--GTCAAACCCGTGCGCGTAATGAAAGTGAA 488 | |||| | ||||||| ||| |||||||||||| Sbjct 114 TAGGGTGAGCCAAACCCCGAGGCGCAATGAAAGTGAA 78 >seq86337 Length=320 Score = 149 bits (164), Expect = 3e-33 Identities = 117/140 (84%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 || || |||| |||| || |||||| |||||||||||||||||||||||| ||| ||| Sbjct 181 GGCTTCGAGTCCGAGCGTACCTGTTGCGACCCGAAAGATGGTGAACTATGCTTGAGTAGA 240 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 |||||| ||| |||| ||| |||||| ||| |||| | ||| ||||||||||| |||| Sbjct 241 GTGAAGTCAGGCGAAAGCCTGATGGAGGTTCGTAGCGATACTGACGTGCAAATCGTTCGT 300 Query 663 CAAATTTGGGTATAGGGGCG 682 |||| ||||||||||||||| Sbjct 301 CAAACTTGGGTATAGGGGCG 320 >seq215693 Length=1484 Score = 147 bits (162), Expect = 9e-33 Identities = 134/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 32 CCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAA 91 |||||| |||||| ||||||||||| |||||| | || |||| |||| | | | ||||| Sbjct 747 CCTTCGCGGAGTCGGGTTGTTTGGGACTGCAGCCCAAAGTGGGTGGTAGACTCCATCTAA 688 Query 92 AGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCA 151 ||||||||| |||| ||||||||||||| ||||||| | || ||||| ||||||||| Sbjct 687 AGCTAAATACTGGCGCGAGACCGATAGCGGACAAGTACCGCGAGGGAAAGGTGAAAAGCA 628 Query 152 CTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGC 200 ||||| ||||||||| || || || |||| ||| ||||||| || Sbjct 627 CTTTGAAAAGAGAGTCCAAGAGAGCGCGAAACCGTTAGGAGGGAAGTGC 579 Score = 87.8 bits (96), Expect = 7e-15 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 404 GCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GT 461 ||| ||||||||| |||||||||||||||||||||||| | |||||| || |||| | Sbjct 164 GCGTCCCGTCTTGTAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCTTAGGGTGAGC 105 Query 462 CAAACCCGTGCGCGTAATGAAAGTGAA 488 ||||||| ||| |||||||||||| Sbjct 104 CAAACCCCGAGGCGCAATGAAAGTGAA 78 >seq86338 Length=241 Score = 147 bits (162), Expect = 9e-33 Identities = 134/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 32 CCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAA 91 |||||| |||||| ||||||||||| |||||| | || |||| |||| | | | ||||| Sbjct 59 CCTTCGCGGAGTCGGGTTGTTTGGGACTGCAGCCCAAAGTGGGTGGTAGACTCCATCTAA 118 Query 92 AGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCA 151 ||||||||| |||| ||||||||||||| ||||||| | || ||||| ||||||||| Sbjct 119 AGCTAAATACTGGCGCGAGACCGATAGCGGACAAGTACCGCGAGGGAAAGGTGAAAAGCA 178 Query 152 CTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGC 200 ||||| ||||||||| || || || |||| ||| ||||||| || Sbjct 179 CTTTGAAAAGAGAGTCCAAGAGAGCGCGAAACCGTTAGGAGGGAAGTGC 227 >seq54214 Length=453 Score = 136 bits (150), Expect = 2e-29 Identities = 107/127 (84%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 || |||||||||| |||||||||||||| ||| ||||||||||| | ||||||| | Sbjct 85 GGTGGTAAATTTCATCTAAAGCTAAATACGGGCTCGAGACCGATAGTGAACAAGTACCAT 144 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 || ||||||||||||| ||||||||||||||||| ||||| | |||||| | |||||| Sbjct 145 GAGGGAAAGATGAAAAGGACTTTGGAAAGAGAGTT-AAAAGTGCTTGAAATCGCTGAAAG 203 Query 193 GGAAGCG 199 ||||||| Sbjct 204 GGAAGCG 210 >seq7941 Length=275 Score = 136 bits (150), Expect = 2e-29 Identities = 107/127 (84%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 || |||||||||| |||||||||||||| ||| ||||||||||| | ||||||| | Sbjct 270 GGTGGTAAATTTCATCTAAAGCTAAATACGGGCTCGAGACCGATAGTGAACAAGTACCAT 211 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 || ||||||||||||| ||||||||||||||||| ||||| | |||||| | |||||| Sbjct 210 GAGGGAAAGATGAAAAGGACTTTGGAAAGAGAGTT-AAAAGTGCTTGAAATCGCTGAAAG 152 Query 193 GGAAGCG 199 ||||||| Sbjct 151 GGAAGCG 145 >seq7619 Length=488 Score = 107 bits (118), Expect = 8e-21 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 77 GTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATC 136 ||||| | | |||||||||||||| ||| ||||||||||||| ||||||| ||| Sbjct 488 GTAAACTCCATCTAAAGCTAAATACCGGCACGAGACCGATAGCGAACAAGTACCATGAGG 429 Query 137 GAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||||| ||||||| |||||| ||||||||| |||||| || |||| ||| |||||| Sbjct 428 GAAAGGTGAAAAGTACTTTGAAAAGAGAGTCAAAAAGACCGCGAAACCGTTAGGAGGGAA 369 Query 197 GCGCTTGCA 205 || |||| Sbjct 368 ACGAATGCA 360 >seq61065 Length=229 Score = 95.1 bits (104), Expect = 5e-17 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||||||||||||||||||||||||||||||| || || ||| ||||||||||| | || Sbjct 229 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTC 170 Query 664 AAATTTGGGTATAGGGGCGA 683 || ||||| |||||||||| Sbjct 169 GAACTTGGGCATAGGGGCGA 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2074572549400