Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq124542 163 3e-38 seq124543 156 4e-36 seq124545 136 4e-30 >seq124542 Length=457 Score = 163 bits (180), Expect = 3e-38 Identities = 146/182 (80%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61 || |||||||||||| | ||||| ||||||||||||||| ||||||||| || | Sbjct 306 TAGCTGAAGCTTAGAGGATTTTCCTGGAAGCATGGCATCGACCACTTCGGACTCCGTAGA 247 Query 62 ATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACC 121 | || |||||||| || |||| || | ||||||||| |||||| | | ||||||| Sbjct 246 GTCAC-CGTCATCACGTCTCGGCATTGAAGACCCGGATTTGCCTAAGTCTTCTGCCTACC 188 Query 122 ACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCAT 181 | ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 187 AGCTTAAACACGGACAACCAACGCCGTGCTGGCCTAGCCTTCTCCGTCCCCCCATCGCAC 128 Query 182 TA 183 || Sbjct 127 TA 126 >seq124543 Length=391 Score = 156 bits (172), Expect = 4e-36 Identities = 149/186 (80%), Gaps = 11/186 (6%) Strand=Plus/Minus Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61 || |||||||||||| ||||||||||||||||||||||||| |||||||| | | Sbjct 220 TAGCTGAAGCTTAGAGGCTTTTCTTGGAAGCATGGCATCAATCACTTCGTTGCCGTAGC- 162 Query 62 ATAACTCGTCATCAGCTCCCGGCCTTA--GAATCCCGGATTTACCTAAGATTC--CAGCC 117 |||||||||||| ||| | || ||| ||| |||||||| |||| |||| | ||| Sbjct 161 --AACTCGTCATCAACTCTCAGCATTAAGGAA--CCGGATTTGCCTA--ATTCCTCTGCC 108 Query 118 TACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATC 177 ||| | ||||||| |||| ||||||| ||| |||| |||||||| ||||||||| ||||| Sbjct 107 TACAATCTTAAACCTGGATAACCAACACCAGGCTGACCTAGCCTACTCCGTCCCCCCATC 48 Query 178 GCATTA 183 ||| || Sbjct 47 GCACTA 42 >seq124545 Length=298 Score = 136 bits (150), Expect = 4e-30 Identities = 118/146 (81%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60 |||||||||||||||||| ||||| |||||||||||||||||| ||||| | | | | Sbjct 148 TTACCTGAAGCTTAGAAGTTTTTCCTGGAAGCATGGCATCAACTACTTCATGTCCGTAGA 89 Query 61 GATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTAC 120 | |||||||||||||| | |||||| ||||||||| |||||| |||||||| Sbjct 88 CA---CTCGTCATCAGCTCTCAGCCTTAAGTACCCGGATTTGCCTAAGTACTCAGCCTAC 32 Query 121 CACCTTAAACTTGGACAACCAACGCC 146 ||||||||| |||||||||||||| Sbjct 31 TACCTTAAACGCGGACAACCAACGCC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517129293384