Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq140443 107 2e-21 seq118348 100 3e-19 seq117688 98.7 9e-19 seq237223 89.7 5e-16 seq108960 89.7 5e-16 seq108959 89.7 5e-16 seq25714 87.8 2e-15 seq127466 84.2 2e-14 seq178537 75.2 1e-11 seq178526 75.2 1e-11 seq117689 73.4 4e-11 seq23461 73.4 4e-11 >seq140443 Length=292 Score = 107 bits (118), Expect = 2e-21 Identities = 131/174 (75%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||||| || | ||||||| ||||||||| || |||||| ||| |||||| Sbjct 27 GGTGGATGCCTAGACTGTAAGAGGCGATGAAGGACGTACTAGACTGCGATAAGGTACGGG 86 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAG 126 || || || | | | |||||||||| || |||||||||| |||||| ||| ||||| Sbjct 87 GAGCTGTCA-AGAAGCTTTGATCCGTACATTTCCGAATGGGACAACCCAGCATA-TGGAG 144 Query 127 ATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 | |||| || | | || ||| ||| ||| ||| |||||||||| |||| Sbjct 145 ACATATGTTACCTTT---CGAGGGGCTAACCTGGTGAAGTGAAACATCTCAGTA 195 >seq118348 Length=498 Score = 100 bits (110), Expect = 3e-19 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||||| || | ||||||| ||||||||| || |||||| ||||| ||| Sbjct 436 GGTGGATGCCTAGACTGTAAGAGGCGATGAAGGACGTACTAGACTGCGATAAGCTTTGGG 377 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 || | | | | |||||||| |||| |||||||||| |||||| ||| |||||| Sbjct 376 GAGCCGTCAAGAGGCATTGATCCAGAGATTTCCGAATGGGACAACCCAGCATA-TGGAGA 318 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 |||| || | | || ||| ||| ||| ||| |||||||||| |||| Sbjct 317 CATATGTTACCTTT---CGAGGGGCTAACCTGGTGAAGTGAAACATCTCAGTA 268 >seq117688 Length=529 Score = 98.7 bits (108), Expect = 9e-19 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| | || |||||||| ||| || |||| ||| ||||||||||||||||||||| ||| Sbjct 406 GGCAAAAGGCGGATGCCTTGGCACTAGGAGCCGATGAAGGACGTGATAAGCTGCGATAAG 347 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || ||||| ||| || ||||||| |||| ||||||||||| ||||| Sbjct 346 CTTTGGGGAGATGCAAGTAATCGTTGATCCAGAGATTTCCGAATGGGGAAACCC 293 >seq237223 Length=447 Score = 89.7 bits (98), Expect = 5e-16 Identities = 86/109 (79%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| |||||||| | || |||||||||||| |||| Sbjct 315 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGCGGTAGCCTGCGAAAAGCTTCGGG 374 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCG 115 || ||||| | | |||||||| |||| ||||||||||| |||||| Sbjct 375 GAGCTGGCAAACGAGCTTTGATCCGGAGATGTCCGAATGGGGAAACCCG 423 >seq108960 Length=252 Score = 89.7 bits (98), Expect = 5e-16 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| |||||| ||||||| ||| ||||||||||||||||| ||| |||| Sbjct 102 GGTGGATGCCTTGGCTCTTAGAGGCGATGAAAGACGTGATAAGCTGCGATAAGTATCGGG 161 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || ||| | | |||||||| || || |||||||||||||| Sbjct 162 GAGGTGCAAACAACCTTTGATCCGATAATTTCTGAATGGGGCAACCC 208 >seq108959 Length=253 Score = 89.7 bits (98), Expect = 5e-16 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| |||||| ||||||| ||| ||||||||||||||||| ||||| || | Sbjct 102 GGTGGATGCCTTGGCTCTTAGAGGCGATGAAAGACGTGATAAGCTGCGATAAGCTGCGTG 161 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | ||| || | ||| || |||| ||||||||||| ||||| Sbjct 162 TAGCCGCAAGTAGGCCGTGAAACGCAGATTTCCGAATGGGGAAACCC 208 >seq25714 Length=538 Score = 87.8 bits (96), Expect = 2e-15 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| ||||||||||||| ||| ||||||||||||||||||| | |||||||||| Sbjct 39 GGCATACGGTGGATGCCTTGGCATGTGGAGGCGAAGAAGGACGTGGCTAACTGCGAAAAG 98 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACC 113 | || ||| ||| | | ||||| || ||| |||||||||||||||| Sbjct 99 CCTCGAGGAGTGGTAAGCGCACTTTGATTCGGGGATTTCCGAATGGGGCAACC 151 >seq127466 Length=212 Score = 84.2 bits (92), Expect = 2e-14 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | || |||||||| ||| || ||||||||||||||||||| |||||||||||||| Sbjct 174 GCATAGGGCGGATGCCTTGGCACTAGGAGGCGAAGAAGGACGTGGTAAGCTGCGAAAAGT 115 Query 62 TACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCG 115 ||||| ||| | ||||||| || ||||||||||| |||||| Sbjct 114 CTTGGGGAGCTGCAAGCGAGCGTTGATCCAGGAATGTCCGAATGGGGAAACCCG 61 >seq178537 Length=272 Score = 75.2 bits (82), Expect = 1e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||||||||||||||||| || ||||||| |||||||||||||| |||||| |||| Sbjct 64 ACGGTGGATGCCTAGGCAATCAGAGGCGATGAAGGACGTGATAATCTGCGATAAGC 119 >seq178526 Length=602 Score = 75.2 bits (82), Expect = 1e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||||||||||||||||| || ||||||| |||||||||||||| |||||| |||| Sbjct 64 ACGGTGGATGCCTAGGCAATCAGAGGCGATGAAGGACGTGATAATCTGCGATAAGC 119 >seq117689 Length=502 Score = 73.4 bits (80), Expect = 4e-11 Identities = 84/113 (74%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | || |||||||| ||| | ||| ||| |||||||||| |||||||||| ||| Sbjct 501 GCACAGGGCGGATGCCTTGGCACCAAGAGTCGATGAAGGACGTGGTAAGCTGCGATAAGT 442 Query 62 TACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | ||||| ||| | | ||||||| | || ||||||||||| ||||| Sbjct 441 TTTGGGGAGCCGCAAGCAGGCTTTGATCCAGAAATTTCCGAATGGGGAAACCC 389 >seq23461 Length=473 Score = 73.4 bits (80), Expect = 4e-11 Identities = 81/107 (76%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 |||||||| || ||| | || ||||||||||||||| | ||||||| ||||| |||| Sbjct 92 GGTGGATGACTTGGCGTTAAGAT-CGAAGAAGGACGTGACAGGCTGCGATAAGCTGCGGG 150 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || | || ||| | ||||| |||| ||||||||||| |||| Sbjct 151 GAGTTGCCAATAAACTTAAATCCGCAGATTTCCGAATGGGGGGACCC 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475631263668