Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq170137 304 2e-80 seq100796 134 2e-29 >seq170137 Length=630 Score = 304 bits (336), Expect = 2e-80 Identities = 228/267 (85%), Gaps = 12/267 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 154 ACTCTCTGGCACGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 213 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||||| || | |||| |||| |||| ||||||||||||||| || || Sbjct 214 CCTGTTATTGCCTTC--CTGACTTTGGTTGGATACCAACAGTCCCTCTAAGAAGTCAACC 271 Query 122 --ACC--------AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTA 171 ||| || | || | | | ||||||||||||| |||||||||||||||| Sbjct 272 GCACCGTGCCGGGAAGGACAGCGGGCGTGACTATTTAGCAGGTCAAGGTCTCGTTCGTTA 331 Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 332 ACGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 391 Query 232 GAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||| |||||||||| Sbjct 392 GAATCAAGAAAGAGCTCTCAATCTGTC 418 >seq100796 Length=265 Score = 134 bits (148), Expect = 2e-29 Identities = 80/84 (95%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 87 ACTCTCTGGCACGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 28 Query 62 CCTGTTATTGCCTCAAACTTCCAT 85 |||||||||||||||||||||||| Sbjct 27 CCTGTTATTGCCTCAAACTTCCAT 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794846876868