Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq181386 300 3e-79 seq181385 300 3e-79 seq181384 300 3e-79 seq181388 289 5e-76 seq181387 289 5e-76 seq173673 228 1e-57 seq116708 96.9 6e-18 seq116707 96.9 6e-18 seq116706 96.9 6e-18 >seq181386 Length=399 Score = 300 bits (332), Expect = 3e-79 Identities = 175/181 (97%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 219 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAACCCCAGCTCACGTTCCCTA 278 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 279 TTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGA 338 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 339 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 398 Query 211 C 211 | Sbjct 399 C 399 >seq181385 Length=425 Score = 300 bits (332), Expect = 3e-79 Identities = 175/181 (97%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 245 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAACCCCAGCTCACGTTCCCTA 304 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 305 TTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGA 364 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 424 Query 211 C 211 | Sbjct 425 C 425 >seq181384 Length=526 Score = 300 bits (332), Expect = 3e-79 Identities = 175/181 (97%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 346 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAACCCCAGCTCACGTTCCCTA 405 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 406 TTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGA 465 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 525 Query 211 C 211 | Sbjct 526 C 526 >seq181388 Length=289 Score = 289 bits (320), Expect = 5e-76 Identities = 172/180 (96%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 110 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 169 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | |||||||||||||||| | ||| |||||||||||||| |||||||||||||||||| Sbjct 170 TGGTGGGTGAACAATCCATCACTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGAC 229 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 230 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 289 >seq181387 Length=353 Score = 289 bits (320), Expect = 5e-76 Identities = 192/212 (91%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| | |||| || | || ||||||||||||||||||||||||| Sbjct 142 TACTGAGCCGGATTACTGTGACGGCGCCGATGCAGCAGTAGGGTAAAACTAACCTGTCTC 201 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||| | ||| || Sbjct 202 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCATCACTTGGCG 261 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 321 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||||||||||||||||| Sbjct 322 TGAACGCTTGGCTGCCACAAGCCAGTTATCCC 353 >seq173673 Length=391 Score = 228 bits (252), Expect = 1e-57 Identities = 144/156 (92%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 391 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 332 Query 198 AAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTA 257 |||||||||||||||||||||||||||||| |||||||||| | ||| | | | ||| Sbjct 331 AAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTAAAACTCCTAACCGCTA 272 Query 258 AAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||||||| |||||| ||||||||||| Sbjct 271 AAGGATCGATAGGCCACGCTTTCACGGTTTGTATTC 236 >seq116708 Length=431 Score = 96.9 bits (106), Expect = 6e-18 Identities = 127/175 (73%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 165 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACC 224 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||||||| | || | | |||| || ||||||||||||| | |||| | Sbjct 225 CTTGGGACCGAATACAGCCCCAGGATGA---GACGAGCCGACATCGAGGTGCCAAACCTC 281 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | || || ||||| | | ||||| |||||||| | |||| ||||| Sbjct 282 CCCGTCGATGTGGACTCTTGGGGGAGATAAGCCTGTTATCCCCGGGGTAGCTTTT 336 >seq116707 Length=599 Score = 96.9 bits (106), Expect = 6e-18 Identities = 127/175 (73%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 333 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACC 392 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||||||| | || | | |||| || ||||||||||||| | |||| | Sbjct 393 CTTGGGACCGAATACAGCCCCAGGATGA---GACGAGCCGACATCGAGGTGCCAAACCTC 449 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | || || ||||| | | ||||| |||||||| | |||| ||||| Sbjct 450 CCCGTCGATGTGGACTCTTGGGGGAGATAAGCCTGTTATCCCCGGGGTAGCTTTT 504 >seq116706 Length=621 Score = 96.9 bits (106), Expect = 6e-18 Identities = 127/175 (73%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 355 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACC 414 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||||||| | || | | |||| || ||||||||||||| | |||| | Sbjct 415 CTTGGGACCGAATACAGCCCCAGGATGA---GACGAGCCGACATCGAGGTGCCAAACCTC 471 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | || || ||||| | | ||||| |||||||| | |||| ||||| Sbjct 472 CCCGTCGATGTGGACTCTTGGGGGAGATAAGCCTGTTATCCCCGGGGTAGCTTTT 526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 852238128768