Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq126588 127 4e-27 seq126586 114 3e-23 seq126587 109 1e-21 >seq126588 Length=235 Score = 127 bits (140), Expect = 4e-27 Identities = 104/123 (85%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 249 AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTC 308 ||| |||||||||||||||| | ||||||| | ||| ||||||||||| |||||||||| Sbjct 232 AGGGCGTATGCGGTATTAGCATGCGTTTCCACATGTTGTCCCCCACTACTAGGCAGATTC 173 Query 309 CTAGGCATTACTCACCCGTCCGCCGCTC-TCA-AGAGAAGCAAGCTTCTC--TCTACCGC 364 ||| || ||||||||||||||||||||| ||| ||| |||||||| ||| |||||| Sbjct 172 CTACGCGTTACTCACCCGTCCGCCGCTCGTCAGCGAGTAGCAAGCTACTCCTGTTACCGC 113 Query 365 TCG 367 ||| Sbjct 112 TCG 110 >seq126586 Length=250 Score = 114 bits (126), Expect = 3e-23 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 249 AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTC 308 ||| |||||||||||||||| | ||||||| | ||| ||||||||||| |||||||||| Sbjct 247 AGGGCGTATGCGGTATTAGCATGCGTTTCCACATGTTGTCCCCCACTACTAGGCAGATTC 188 Query 309 CTAGGCATTACTCACCCGTCCGCCGCTC 336 ||| || ||||||||||||||||||||| Sbjct 187 CTACGCGTTACTCACCCGTCCGCCGCTC 160 >seq126587 Length=243 Score = 109 bits (120), Expect = 1e-21 Identities = 88/106 (83%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 255 TATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGC 314 |||||||||||||| ||||||| | |||||||||| | || ||||||| ||||||| Sbjct 243 TATGCGGTATTAGCCATCGTTTCCAATGGTTATCCCCCTCGACTGGGCAGATCCCTAGGC 184 Query 315 ATTACTCACCCGTCCGCCGCT---CTCAAGAGAAGCAAGCTTCTCT 357 ||||||||||||||||||||| | | |||| |||||||| |||| Sbjct 183 ATTACTCACCCGTCCGCCGCTCGACGCCAGAGTAGCAAGCTACTCT 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1069287539840