Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq170140 95.1 7e-18 seq170141 86.0 4e-15 seq100796 84.2 1e-14 seq24980 82.4 5e-14 >seq170140 Length=252 Score = 95.1 bits (104), Expect = 7e-18 Identities = 80/92 (87%), Gaps = 5/92 (5%) Strand=Plus/Plus Query 33 GCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGT 92 |||||| ||||| | ||||||||| ||||| || ||||||||| ||||||||||| |||| Sbjct 162 GCCAAT-CCGAA-GATCTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGT 217 Query 93 ACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||||| | | |||||| |||| Sbjct 218 ACAAAGGGCAGGGACGGAGT-CAACGCGAGCT 248 >seq170141 Length=251 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 175 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 232 Query 109 TAATACAACGCAAGCT 124 | | |||||| |||| Sbjct 233 GAGT-CAACGCGAGCT 247 >seq100796 Length=265 Score = 84.2 bits (92), Expect = 1e-14 Identities = 58/63 (92%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||||| ||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 259 TTCAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 202 Query 122 GCT 124 ||| Sbjct 201 GCT 199 >seq24980 Length=237 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || || |||||| ||||||||||| | |||||||||||||||||| Sbjct 237 CTCACTAAACCATT-CAATCTGTAGTA-GCGACGGGCGGTGGGTACAAAGGGCAGGGACG 180 Query 109 TAATACAACGCAAGCT 124 |||| || ||| |||| Sbjct 179 TAAT-CAGCGCGAGCT 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300086461040