Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq124392 100 5e-19 seq124393 96.9 6e-18 >seq124392 Length=286 Score = 100 bits (110), Expect = 5e-19 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| || || |||||| |||||||| ||||||||||||| ||| | Sbjct 127 CCCACGCTTTCGCATCTGAGTGTCAGTATCTGTCCAGGGGGCCGCCTTCGCCACCGGTAT 68 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| | || |||||||||||||||||||||| | ||||| ||||| ||| || Sbjct 67 TCCTTCAGATCTCTACGCATTTCACCGCTACACCTGAAATTCTACCCCCCTCTACAGTAC 8 Query 121 TCAAG 125 || || Sbjct 7 TCTAG 3 >seq124393 Length=272 Score = 96.9 bits (106), Expect = 6e-18 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||| |||| | | |||||||||| | ||| Sbjct 113 CCCACGCTTTCGTGCCTCAGCGTCAGTATTAAGCCAGACAGCTGCCTTCGCCATCGATGT 54 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCT 113 |||||| ||||||| | |||||||| |||||| ||||||||| | ||||| Sbjct 53 TCCTCCTAATATCTATGGATTTCACCCCTACACTAGGAATTCCGCTGCCCTCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 826768438188