Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq133601 192 6e-47 seq133600 140 3e-31 seq133605 120 3e-25 seq133598 111 1e-22 seq133602 104 2e-20 seq133603 102 8e-20 seq25708 95.1 1e-17 seq25709 86.0 6e-15 seq133606 80.6 3e-13 seq116708 80.6 3e-13 seq116707 80.6 3e-13 seq116706 80.6 3e-13 seq100891 75.2 1e-11 >seq133601 Length=313 Score = 192 bits (212), Expect = 6e-47 Identities = 136/156 (87%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| Sbjct 293 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGACCTACTTTCGTACCTG 234 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| |||||||||||||| |||||| ||||| ||||||| || |||||| Sbjct 233 CTCGACGTGTCTGTCTCGCAGTCAAGCTGGCTTATACCATTATACTAACCGCATGATGTC 174 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| || ||||| |||||||| ||||||||||| Sbjct 173 CGACCATGCTTAGCCAACCTTCGTACTCCTCCGTTA 138 >seq133600 Length=324 Score = 140 bits (154), Expect = 3e-31 Identities = 127/158 (80%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| Sbjct 304 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGACCGACTTTCGTCTCTG 245 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCA--CTAACCTCACGATG 141 |||| |||| |||||||||| || |||||||||||||||| ||||| | ||| Sbjct 244 CTCGGCGTGTCAGCCTCGCAGTCAGGCAAGCTTATGCCATTGCACTCTAACAAC-TGATT 186 Query 142 TCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 || |||| | |||| ||||||| | ||||||||| Sbjct 185 TCTGACCAGTCTGAGCTTACCTTCGCACGCCTCCGTTA 148 >seq133605 Length=304 Score = 120 bits (132), Expect = 3e-25 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 26 TGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCT 85 ||||||| ||||||||||||| | ||| ||||||||||| | || |||||| | |||| Sbjct 304 TGAGCGACGGCCCTTCCATTCGGTACCGCCGGATCACTAAGCCCGACTTTCGTCCTTGCT 245 Query 86 CGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCG 145 ||| | || ||||||| |||||| |||||||| ||||||| | ||||| |||| Sbjct 244 CGACCTGTATGTCTCGCAATCAAGCTCCCTTATGCCTTTGCACTCTTCGTACGATTTCCG 185 Query 146 ACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | || |||||| | || ||||||||| Sbjct 184 ACCGTACTGAGGGGACCTTTGGGCGCCTCCGTTA 151 >seq133598 Length=371 Score = 111 bits (122), Expect = 1e-22 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||||| | | ||| ||||||||||| | || |||||| |||| Sbjct 351 GTTGAGCGACGGCCCTTCCATGCGGGACCGCCGGATCACTAAGTCCAACTTTCGTTCCTG 292 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || |||||||||||||| ||| |||| || |||| | ||||| || Sbjct 291 CTCGACTTGTAGGTCTCGCAGTCAAGCTCTCTTGTGCCTTTACACTCTACGTACGATTTC 232 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| | || ||||| | || ||||||||| Sbjct 231 CGACCGTACTGAGAGAACCTTTGAGCGCCTCCGTTA 196 >seq133602 Length=313 Score = 104 bits (114), Expect = 2e-20 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| | ||||||||||||||||||| || |||||| ||||| Sbjct 292 TTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTATGCTCTACTTTCGTACCTGA 233 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| || |||| ||||||||| ||| ||||||| |||| Sbjct 232 TCGACTTGTTGGTCTCACAGTCAAGCACCCTTGTGCCATTACACT 188 >seq133603 Length=308 Score = 102 bits (112), Expect = 8e-20 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 26 TGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCT 85 ||||||| ||||||||||||| | ||| ||||||||||| | || |||||| | |||| Sbjct 308 TGAGCGACGGCCCTTCCATTCGGTACCGCCGGATCACTAAGCCCGACTTTCGTCCTTGCT 249 Query 86 CGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCG 145 ||| | || ||||||| |||||| ||| |||| ||||||| | | |||| ||| Sbjct 248 CGACCTGTATGTCTCGCAATCAAGCTCCCTTCTGCCTTTGCACTCTTCGCGCGATTTCCA 189 Query 146 ACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||| | || ||||| | || ||||||||| Sbjct 188 ACCGCACTGAGGGAACCTTTGGGCGCCTCCGTTA 155 >seq25708 Length=277 Score = 95.1 bits (104), Expect = 1e-17 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 50 ACCACCGGATCACTATGACCTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAG 109 ||| | ||||||||| | ||| |||||| | |||||||| |||||| ||| |||| | | Sbjct 269 ACCGCTGGATCACTAGGTCCTACTTTCGTAACTGCTCGACCCGTCAGTCTTACAGTAAGG 210 Query 110 CCAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAGCTGACCTTCGTGC 169 | ||||| || || | || | ||||||| ||||||||| | || ||||||| || Sbjct 209 CACACTTATACCCTTACGCTCTACGCACGATGACCGACCGTGCTGAGTGTACCTTCGAGC 150 Query 170 TCCTCCGTTA 179 |||||||||| Sbjct 149 TCCTCCGTTA 140 >seq25709 Length=277 Score = 86.0 bits (94), Expect = 6e-15 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 50 ACCACCGGATCACTATGACCTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAG 109 ||| | ||||||||| | ||| |||||| | |||||||| |||||| ||| |||| | | Sbjct 269 ACCGCTGGATCACTAGGTCCTACTTTCGTAACTGCTCGACCCGTCAGTCTTACAGTAAGG 210 Query 110 CCAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAGCTGACCTTCGTGC 169 | ||||| || || | || |||| ||| || ||| |||| ||| ||||||| | Sbjct 209 CACACTTATACCCTTACGCTCTACTCATGATTGCCAACCATGATGAGCCAACCTTCGAAC 150 Query 170 TCCTCCGTTA 179 |||||||||| Sbjct 149 TCCTCCGTTA 140 >seq133606 Length=292 Score = 80.6 bits (88), Expect = 3e-13 Identities = 109/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 28 AGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTCG 87 ||| | |||| ||||| |||| || |||||||| || || |||||| |||||||| Sbjct 292 AGCTACGGCCTTTCCACACAGAGCCGTAGGATCACTTTGCCCGACTTTCGTCCCTGCTCG 233 Query 88 AGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCGAC 147 | || ||||||||||||||| ||||||||| ||| | ||||| ||| | Sbjct 232 ACTTGTAGGTCTCGCAGTCAAGCCCTCTTATGCCAATGCGTTCTGTGGACGATTTCCATC 173 Query 148 CGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||| | || |||||| | || ||||||||| Sbjct 172 CGTCCTGAGAGGACCTTTGGGCGCCTCCGTTA 141 >seq116708 Length=431 Score = 80.6 bits (88), Expect = 3e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||||||| | ||| ||||||||||| | || |||||| | || Sbjct 341 GTTGAGCGACGGCCCTTCCATTCGGTACCGCCGGATCACTAAGCCCGACTTTCGTCCTTG 400 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGC 110 ||||| | || ||||||| |||||| Sbjct 401 CTCGACCTGTATGTCTCGCAATCAAGC 427 >seq116707 Length=599 Score = 80.6 bits (88), Expect = 3e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||||||| | ||| ||||||||||| | || |||||| | || Sbjct 509 GTTGAGCGACGGCCCTTCCATTCGGTACCGCCGGATCACTAAGCCCGACTTTCGTCCTTG 568 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGC 110 ||||| | || ||||||| |||||| Sbjct 569 CTCGACCTGTATGTCTCGCAATCAAGC 595 >seq116706 Length=621 Score = 80.6 bits (88), Expect = 3e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||||||| | ||| ||||||||||| | || |||||| | || Sbjct 531 GTTGAGCGACGGCCCTTCCATTCGGTACCGCCGGATCACTAAGCCCGACTTTCGTCCTTG 590 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGC 110 ||||| | || ||||||| |||||| Sbjct 591 CTCGACCTGTATGTCTCGCAATCAAGC 617 >seq100891 Length=347 Score = 75.2 bits (82), Expect = 1e-11 Identities = 109/154 (71%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 26 TGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCT 85 |||| | |||| ||||| ||| ||| |||||||| | |||||||||||| ||||| Sbjct 334 TGAGTTACGGCCTTTCCACACAGCACCGTAAGATCACTAAGCCCTGCTTTCGCATCTGCT 275 Query 86 CGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCG 145 ||| ||| ||||||||| |||| ||| |||| || |||| | | || | ||| Sbjct 274 CGACGTGTCCGTCTCGCAGTTAAGCTCCCTTCTGCCTTTACACTCTACGCGCGGTTTCCA 215 Query 146 ACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | || | | || ||||| | | ||||||||| Sbjct 214 ATCGCGCTGAGGGAACCTTAGGGTGCCTCCGTTA 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472439107536