Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq116708 365 7e-99 seq116707 334 1e-89 seq116706 334 1e-89 seq116709 244 2e-62 seq236370 134 2e-29 seq99771 122 1e-25 seq6390 89.7 8e-16 seq6389 89.7 8e-16 >seq116708 Length=431 Score = 365 bits (404), Expect = 7e-99 Identities = 241/267 (90%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 9 GCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCA 68 |||||| ||||||||||||||||| ||||||| |||| |||||||| |||||| |||| Sbjct 1 GCTTCGCGCTTAGATGCCTTCAGCGCTTATCCATTCCGCACTTAGCTACCCAGCCATGCC 60 Query 69 CTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGAC 128 |||| ||||||||| |||||||||| |||||||||||||||||||||||| |||| Sbjct 61 ACTGGCGTGACAACTGGTACACCAGAGGTGCGTCCATCCCGGTCCTCTCGTACTAGGGAC 120 Query 129 AGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTC 188 || || ||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 121 AGATCTCCTCAAATTTCCTACGCCTGCGACGGATAGGGACCGAACTGTCTCACGACGTTC 180 Query 189 TGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCA 248 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || Sbjct 181 TGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCGAATACA 240 Query 249 GCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||||||||||||||||||||| Sbjct 241 GCCCCAGGATGAGACGAGCCGACATCG 267 >seq116707 Length=599 Score = 334 bits (370), Expect = 1e-89 Identities = 235/268 (88%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 ||||||| |||||||||| ||||||||||||| | ||| || ||||| |||| | |||| Sbjct 168 GGCTTCGAGCTTAGATGCTTTCAGCTCTTATCACATCCGTACGTAGCTACCCAACGATGC 227 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 |||||||| |||| |||| ||| || ||| || ||||||||||||||||||||| ||| Sbjct 228 CCTTGGCAGAACAATTGGTACACTAGTGGTACGTTCATCCCGGTCCTCTCGTACTAGGGA 287 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 || || |||| ||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 288 CAAATCTCTTCAACTTTCCTACGCCCACGGAAGATAGGGACCGAACTGTCTCACGACGTT 347 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | Sbjct 348 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCGAATAC 407 Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||||||||||||||||||| Sbjct 408 AGCCCCAGGATGAGACGAGCCGACATCG 435 >seq116706 Length=621 Score = 334 bits (370), Expect = 1e-89 Identities = 235/268 (88%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 ||||||| |||||||||| ||||||||||||| | ||| || ||||| |||| | |||| Sbjct 190 GGCTTCGAGCTTAGATGCTTTCAGCTCTTATCACATCCGTACGTAGCTACCCAACGATGC 249 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 |||||||| |||| |||| ||| || ||| || ||||||||||||||||||||| ||| Sbjct 250 CCTTGGCAGAACAATTGGTACACTAGTGGTACGTTCATCCCGGTCCTCTCGTACTAGGGA 309 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 || || |||| ||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 310 CAAATCTCTTCAACTTTCCTACGCCCACGGAAGATAGGGACCGAACTGTCTCACGACGTT 369 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | Sbjct 370 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCGAATAC 429 Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||||||||||||||||||| Sbjct 430 AGCCCCAGGATGAGACGAGCCGACATCG 457 >seq116709 Length=366 Score = 244 bits (270), Expect = 2e-62 Identities = 173/198 (87%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 78 ACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCT 137 ||||| ||| |||||||||| ||||| ||||||||||||||||||| ||| || | | || Sbjct 2 ACAACCGGTACACCAGAGGTCTGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTTCCCT 61 Query 138 CAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAG 197 ||| |||| |||||||| ||||||| |||||||||||||| |||||||||||||||| Sbjct 62 CAAGCCTCCTGCGCCCACGGCGGATAGAGACCGAACTGTCTCACGACGTTCTGAACCCAA 121 Query 198 CTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGA 257 ||| ||| || ||||||| ||||||||||| |||||||||||||| |||||||||||||| Sbjct 122 CTCACGTACCCCTTTAATCGGCGAACAGCCGAACCCTTGGGACCTCCTTCAGCCCCAGGA 181 Query 258 TGAGACGAGCCGACATCG 275 || |||||| |||||||| Sbjct 182 TGGGACGAGGCGACATCG 199 >seq236370 Length=297 Score = 134 bits (148), Expect = 2e-29 Identities = 147/194 (76%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| || ||| |||||||||| |||||| |||||| |||| |||||||| | ||| Sbjct 104 GAGGTGGATTTCCTGCTTAGATGCTTTCAGCAATTATCCACTCCATACTTAGCTACTCAG 163 Query 62 CTATGCAC-TTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||| | | ||||| | |||||| ||| |||| | | ||||||||||| Sbjct 164 CATTTCCCGTTGGAACAAGAACTGATACACCAGTGGTATGTCTTTTCAAGTCCTCTCGTA 223 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 || | | ||| |||||||| ||| |||| || |||||| ||||| ||||||||| Sbjct 224 TTATGAAAAGCACCTCTCAATGTTCTAACGCTTACACCGGATATGGACCAAACTGTCTCA 283 Query 181 CGACGTTCTGAACC 194 |||||||||||||| Sbjct 284 CGACGTTCTGAACC 297 >seq99771 Length=302 Score = 122 bits (134), Expect = 1e-25 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| || ||| |||||||||| |||||| || ||| ||| || ||||| ||||| Sbjct 144 GAGGGAGGTTTCACGCTTAGATGCTTTCAGCGTTTCTCCTCTCCGTACATAGCTACCCAG 203 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| |||| ||||||||||||| |||||| ||||| ||||||| |||| ||| Sbjct 204 CGGTGCCACTGGCGTGACAACTGGTGCACTAGAGGTACGTCCACCCCGGTCTTCTCATAC 263 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCC 153 || || |||| ||||||||| |||||||||| Sbjct 264 TAGGGGCAGCATCTCTCAAATATCCTACGCCC 295 >seq6390 Length=268 Score = 89.7 bits (98), Expect = 8e-16 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| || ||| |||||||||| |||||| |||||| |||| |||||||| | ||| Sbjct 160 GAGGTGGATTTCCTGCTTAGATGCTTTCAGCAATTATCCACTCCATACTTAGCTACTCAG 101 Query 62 CTATGCAC-TTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||| | | ||||| | |||||| ||| |||| | | ||||||||||| Sbjct 100 CATTTCCCGTTGGAACAAGAACTGATACACCAGTGGTATGTCTTTTCAAGTCCTCTCGTA 41 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGC 151 || | | ||| |||||||| ||| |||| Sbjct 40 TTATGAAAAGCACCTCTCAATGTTCTAACGC 10 >seq6389 Length=271 Score = 89.7 bits (98), Expect = 8e-16 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| || ||| |||||||||| |||||| |||||| |||| |||||||| | ||| Sbjct 160 GAGGTGGATTTCCTGCTTAGATGCTTTCAGCAATTATCCACTCCATACTTAGCTACTCAG 101 Query 62 CTATGCAC-TTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||| | | ||||| | |||||| ||| |||| | | ||||||||||| Sbjct 100 CATTTCCCGTTGGAACAAGAACTGATACACCAGTGGTATGTCTTTTCAAGTCCTCTCGTA 41 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGC 151 || | | ||| |||||||| ||| |||| Sbjct 40 TTATGAAAAGCACCTCTCAATGTTCTAACGC 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 778886096208