Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq126587 179 9e-43 seq126588 176 1e-41 seq126586 140 8e-31 seq54870 91.5 4e-16 >seq126587 Length=243 Score = 179 bits (198), Expect = 9e-43 Identities = 135/159 (85%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 256 TATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGAC 315 |||||||||||||||| |||||||| |||||||||||||| | ||||| | || || | Sbjct 243 TATGCGGTATTAGCCATCGTTTCCAATGGTTATCCCCCTCGACTGGGCAGATCCCTAGGC 184 Query 316 ATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGA 375 |||||||||||||||||| |||| | | || |||||||| || ||| ||| |||| Sbjct 183 ATTACTCACCCGTCCGCCGCTCGACGCCAGAGTAGCAAGCTACTCTTCGTTTCCGCTCGA 124 Query 376 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||||||||||||||||||||| Sbjct 123 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 85 >seq126588 Length=235 Score = 176 bits (194), Expect = 1e-41 Identities = 136/159 (86%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 256 TATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGAC 315 |||||||||||||| |||||||| ||| |||||| | | |||||| |||| | | Sbjct 226 TATGCGGTATTAGCATGCGTTTCCACATGTTGTCCCCCACTACTAGGCAGATTCCTACGC 167 Query 316 ATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGA 375 ||||||||||||||||| ||||||||||| | |||||||| || |||||||||| |||| Sbjct 166 GTTACTCACCCGTCCGCCGCTCGTCAGCGA-GTAGCAAGCTACT-CCTGTTACCGCTCGA 109 Query 376 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||| ||||||||||||||||||||||||| Sbjct 108 CTTGCATGTGTTAAGCCTGCCGCCAGCGTTCAATCTGAG 70 >seq126586 Length=250 Score = 140 bits (154), Expect = 8e-31 Identities = 128/159 (81%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 256 TATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGAC 315 |||||||||||||| |||||||| ||| |||||| | | |||||| |||| | | Sbjct 241 TATGCGGTATTAGCATGCGTTTCCACATGTTGTCCCCCACTACTAGGCAGATTCCTACGC 182 Query 316 ATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGA 375 ||||||||||||||||| ||||||| | |||||||| |||||||| |||| Sbjct 181 GTTACTCACCCGTCCGCCGCTCGTCATCTTCT-AGCAAGCTAGAAA-TGTTACCGCTCGA 124 Query 376 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||| ||||||||||||||||||||||||| Sbjct 123 CTTGCATGTGTTAAGCCTGCCGCCAGCGTTCAATCTGAG 85 >seq54870 Length=450 Score = 91.5 bits (100), Expect = 4e-16 Identities = 117/159 (74%), Gaps = 7/159 (4%) Strand=Plus/Minus Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCC-AGACATTA 319 || |||||| |||||||| ||||| || || | ||||| || | | |||||| Sbjct 369 GGCATTAGCAGTCGTTTCCAACTGTTATTCCTTTCTAGAGGGCAGGTTAACTATACATTA 310 Query 320 CTCACCCGTCCGCCACTC----GTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGA 375 ||||||||| ||||||| | ||| | |||||||| || ||| ||||||| Sbjct 309 CTCACCCGTGCGCCACTTAGCTGACAGTTAT--AGCAAGCTATAACCCGTTCTCGTTCGA 252 Query 376 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||| || |||||||||||||| |||||| Sbjct 251 CTTGCATGTGTTAAGCACGCCGCCAGCGTTCACTCTGAG 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1219306985728