Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq170137 284 2e-74 seq100796 284 2e-74 seq24980 181 2e-43 >seq170137 Length=630 Score = 284 bits (314), Expect = 2e-74 Identities = 258/320 (81%), Gaps = 14/320 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCT----TTGGCGGGTCGC--CGG-- 71 || ||||||||| ||||||||||||| || ||||||| || ||| || ||| Sbjct 327 GAACGAGACCTTGACCTGCTAAATAGTCACGCCCGCTGTCCTTCCCGGCACGGTGCGGTT 268 Query 72 --CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || || | || | | || ||||||||||||||||| Sbjct 267 GACTTCTTAGAGGGACTGTTGGTATCCAACCAAAGTCAGGA--AGGCAATAACAGGTCTG 210 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||||||||||||||||||||||||||||||||||| | |||| |||| | Sbjct 209 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACCGTGCCAGAGAGTGCCC 150 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||| ||||| ||| ||| ||||||| |||| | ||||||||||||||||| | | Sbjct 149 TTCCTTCGCCGGCAGGCGCGGGCAATCTTGC-AAACGCGGTCGTGCTGGGGATAGATCCT 91 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | | |||| |||||||||| ||||||||||||| | ||||||| |||||||| Sbjct 90 TGCAATTTTCGATCTTGAACGAGGAATTCCTAGTAAGCGCGAGACATCAGCTCGCGTTGA 31 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 30 TTACGTCCCTGCCCTTTGTA 11 >seq100796 Length=265 Score = 284 bits (314), Expect = 2e-74 Identities = 201/229 (88%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 100 GATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCG 159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 GATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCG 62 Query 160 CGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGT 219 |||||||||||| | |||| |||| | |||| ||||| ||| ||| ||||||| Sbjct 63 CGCTACACTGACCGTGCCAGAGAGTGCCCTTCCTTCGCCGGCAGGCGCGGGCAATCTTG- 121 Query 220 TAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCT 279 |||| | ||||||||||||||||| | |||||||| | | |||| |||||||||| ||| Sbjct 122 CAAACGCGGTCGTGCTGGGGATAGATCCTTGCAATTTTCGATCTTGAACGAGGAATTCCT 181 Query 280 AGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 182 AGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 230 >seq24980 Length=237 Score = 181 bits (200), Expect = 2e-43 Identities = 161/199 (81%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| |||||||||||||||||||||||| | | | ||||||| | Sbjct 1 GATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGGCGCACGAAGCGAGTTCGCC 60 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 || ||||| ||| | ||| ||||||| ||| | |||| ||||||||| || Sbjct 61 --CTGGGCCGACAGGCCCGGGCAATCTTGA-AAAGTGCCCCGTGACGGGGATAGACTCTT 117 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| |||| |||||||||||||| |||| |||| ||||||||| |||| |||| Sbjct 118 GCAATTCTTGGTCTTGAACGAGGAATGCCTCGTAATCGCGAGTCATCAGCTCGCGCTGAT 177 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 178 TACGTCCCTGCCCTTTGTA 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944803318784