Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq154686 450 4e-124 seq154684 450 4e-124 seq154688 329 1e-87 seq154685 325 1e-86 seq154683 325 1e-86 seq181382 232 2e-58 seq154687 221 4e-55 seq181383 206 9e-51 seq173673 132 2e-28 seq173674 129 2e-27 seq23362 75.2 4e-11 >seq154686 Length=440 Score = 450 bits (498), Expect = 4e-124 Identities = 257/262 (98%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 272 AAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCC 331 || ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 440 AAGGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGTCC 381 Query 332 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 391 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 380 GTTCCCTTGGCTGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 321 Query 392 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 261 Query 452 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGG 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGG 201 Query 512 CAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||| Sbjct 200 CAGAAATCACATTGCGTCAACA 179 >seq154684 Length=481 Score = 450 bits (498), Expect = 4e-124 Identities = 257/262 (98%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 272 AAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCC 331 || ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 481 AAGGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGTCC 422 Query 332 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 391 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GTTCCCTTGGCTGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 362 Query 392 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 302 Query 452 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGG 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGG 242 Query 512 CAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||| Sbjct 241 CAGAAATCACATTGCGTCAACA 220 >seq154688 Length=255 Score = 329 bits (364), Expect = 1e-87 Identities = 190/195 (97%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 272 AAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCC 331 || ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 255 AAGGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGTCC 196 Query 332 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 391 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 195 GTTCCCTTGGCTGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 136 Query 392 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 76 Query 452 ACTCCCGCCGTTTAC 466 ||||||||||||||| Sbjct 75 ACTCCCGCCGTTTAC 61 >seq154685 Length=467 Score = 325 bits (360), Expect = 1e-86 Identities = 198/210 (94%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 ||||| ||||| ||||||||| |||||||||| ||| ||||||||||||||||||| Sbjct 388 CCAAGACCGTTGGCTTGGCTGTAATTTCGCTAGAGAGTGAGTAGGGACAGTGGGAATCTC 329 Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 328 GTTGATCCATTCATGCGCGTCACCAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAG 269 Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 268 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 209 Query 504 GCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||| Sbjct 208 GCACTGGGCAGAAATCACATTGCGTCAACA 179 >seq154683 Length=508 Score = 325 bits (360), Expect = 1e-86 Identities = 198/210 (94%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 ||||| ||||| ||||||||| |||||||||| ||| ||||||||||||||||||| Sbjct 429 CCAAGACCGTTGGCTTGGCTGTAATTTCGCTAGAGAGTGAGTAGGGACAGTGGGAATCTC 370 Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 369 GTTGATCCATTCATGCGCGTCACCAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAG 310 Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 250 Query 504 GCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||| Sbjct 249 GCACTGGGCAGAAATCACATTGCGTCAACA 220 >seq181382 Length=332 Score = 232 bits (256), Expect = 2e-58 Identities = 241/318 (76%), Gaps = 31/318 (10%) Strand=Plus/Plus Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 |||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||| Sbjct 15 CCTTAGGACACCTGCGTTATCATTTGACAGATGTGCCGCCCCAGCCAAACTCCCAACCTG 74 Query 106 ACAATGTCATCAACCCGGATCGGCCCG------CGAA---GGACC-------TTAACGCC 149 || |||| || ||||||| | | |||| ||| | |||| || Sbjct 75 ACGCTGTCTCGGACTCGGATCGCCACCTCCAGCCGAAATTGGATCACAAGGCTTAAGTCC 134 Query 150 AGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaa-CGATAAGGG 208 ||||| || | | | | |||||| ||| | |||||||||||| ||||||| | Sbjct 135 AGAAAGTGAACCTCGCGGTTCGCCTCCGCTCCATCCAATAAGTAAAAAAAACGATAAGAG 194 Query 209 TAGTGGTATTTCACTTGCGCCGA--------------AACGGCTCCCACTTATTCTACAC 254 |||||||||||||| ||||| |||| |||||||||||||||||| Sbjct 195 TAGTGGTATTTCACCGTCGCCGCCGGACGCGAGGTCCAACGACTCCCACTTATTCTACAC 254 Query 255 CTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCG 314 |||||| ||| |||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 255 CTCTCATGTCTTTTCACAAGGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCG 314 Query 315 CTGATTCCGCCAAGCCCG 332 ||||||| |||||| ||| Sbjct 315 CTGATTCTGCCAAGTCCG 332 >seq154687 Length=303 Score = 221 bits (244), Expect = 4e-55 Identities = 171/203 (84%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 ||||| ||||| ||||||||| |||||||||| ||| ||||||||||||||||||| Sbjct 224 CCAAGACCGTTGGCTTGGCTGTAATTTCGCTAGAGAGTGAGTAGGGACAGTGGGAATCTC 165 Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 164 GTTGATCCATTCATGCGCGTCACCAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAG 105 Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTT----GGTTGAATTTCTTCACTTTGACATT 499 |||||||||||||||||||| |||||||||| | |||| ||| | || | Sbjct 104 TCATAGTTACTCCCGCCGTTGACCCGCGCTTAAAATGCTGAAGCCACTCAGAATAACTTG 45 Query 500 CAGAGCACTGGGCAGAAATCACA 522 ||||||||||||||||| |||| Sbjct 44 CAGAGCACTGGGCAGAATACACA 22 >seq181383 Length=229 Score = 206 bits (228), Expect = 9e-51 Identities = 178/215 (83%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 15 CCTTAGGACACCTGCGTTATCATTTGACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 74 Query 106 ACAATGTCATCAACCCGGATCGGCC-CGCGAA---GGACCTT--AACGCCAGAAAATGGT 159 ||| |||| || ||||||||||||| ||| || |||||| |||||||||| ||| Sbjct 75 ACACTGTCTTCGACCCGGATCGGCCGCGCAAACGGCGACCTTCCAACGCCAGAAGCTGGG 134 Query 160 CGGTGAAGACCAG-TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATT 218 | | |||| || | ||||| |||| || |||||||||||||||| | ||||||||||| Sbjct 135 CCGGGAAGGCCCGCCTCCGCCTCATCGAATAAGTAAAAAAACGATGAAAGTAGTGGTATT 194 Query 219 TCACTTGCG-CCGAAACGGCTCCCACTTATTCTAC 252 |||| ||| |||| | |||||||| ||| |||| Sbjct 195 TCACCGGCGCCCGAGAGAGCTCCCACCTATCCTAC 229 >seq173673 Length=391 Score = 132 bits (146), Expect = 2e-28 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||||||||||||||||||| Sbjct 202 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTGACCTTAGGACACCTGCGTTATC 143 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||||||||||||||||||||||| ||||||| |||| || |||||| Sbjct 142 ATTTGACAGATGTGCCGCCCCAGCCAAACTCCCAACCTGACGCTGTCTCGGACTCGGATC 83 Query 127 G 127 | Sbjct 82 G 82 >seq173674 Length=286 Score = 129 bits (142), Expect = 2e-27 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| |||||||||||||||||||| Sbjct 202 CTTTTGGTCCACATGAGATTTCTGTTCTCATTGAGCTGACCTTAGGACACCTGCGTTATC 143 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||||||||||||||||||||||| ||||||| |||| || |||||| Sbjct 142 ATTTGACAGATGTGCCGCCCCAGCCAAACTCCCAACCTGACGCTGTCTCGGACTCGGATC 83 Query 127 G 127 | Sbjct 82 G 82 >seq23362 Length=509 Score = 75.2 bits (82), Expect = 4e-11 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 21 GAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTG 80 ||| ||||||||||| ||| ||||| ||||||||| ||| | ||||||||||| Sbjct 378 GAGGTTTCTGTTCTCACGGAGCTGCCCTTGGGACACCTGTGTTGCATTATAACAGATGTG 319 Query 81 CCGCCCCAGCCAAACTCCC 99 || |||||||||||||||| Sbjct 318 CCACCCCAGCCAAACTCCC 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1631062486144