Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq181386 125 1e-26 seq181385 125 1e-26 seq181384 125 1e-26 seq173649 93.3 7e-17 >seq181386 Length=399 Score = 125 bits (138), Expect = 1e-26 Identities = 103/123 (84%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| |||||| ||||| || |||| || || | Sbjct 182 GTACGAGAGGAACCGCAGA-TTCAGAC-AATTGGCATTTGCACTTGGCTGAAAAGCCAAT 125 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| | Sbjct 124 GGTGCGAAGCTACCATCTGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGTGCTA 65 Query 121 GAA 123 ||| Sbjct 64 GAA 62 >seq181385 Length=425 Score = 125 bits (138), Expect = 1e-26 Identities = 103/123 (84%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| |||||| ||||| || |||| || || | Sbjct 208 GTACGAGAGGAACCGCAGA-TTCAGAC-AATTGGCATTTGCACTTGGCTGAAAAGCCAAT 151 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| | Sbjct 150 GGTGCGAAGCTACCATCTGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGTGCTA 91 Query 121 GAA 123 ||| Sbjct 90 GAA 88 >seq181384 Length=526 Score = 125 bits (138), Expect = 1e-26 Identities = 103/123 (84%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| |||||| ||||| || |||| || || | Sbjct 309 GTACGAGAGGAACCGCAGA-TTCAGAC-AATTGGCATTTGCACTTGGCTGAAAAGCCAAT 252 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| | Sbjct 251 GGTGCGAAGCTACCATCTGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGTGCTA 192 Query 121 GAA 123 ||| Sbjct 191 GAA 189 >seq173649 Length=388 Score = 93.3 bits (102), Expect = 7e-17 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||||||||||| ||||||||| |||||||||||||| Sbjct 3 TGGCTGAAAAGCCAATGGTGCGAAGCTACCATCTGTTGGATTATGACTGAACGCCTCTAA 62 Query 105 GTCAGAATCCATGCCAGAA 123 |||||||||| ||| |||| Sbjct 63 GTCAGAATCCGTGCTAGAA 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 817191969792