Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq9946 154 5e-33 >seq9946 Length=237 Score = 154 bits (170), Expect = 5e-33 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 2706 AATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACAC 2765 ||| || ||| | || |||||||| || ||||| |||||||| || ||||||||| || Sbjct 237 AATAGGAACTATAACAGAAACTTTAGATGCTATAGAAATGGCTAAGAGAGCTGGATATAC 178 Query 2766 AGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGT 2825 |||||| |||| || | || || |||||||||||||||||||| |||||| | ||||| Sbjct 177 AGCAGTTATATCTCATAGATCTGGAGAAACTGAAGATTCAACAATTGCTGATTTAGCAGT 118 Query 2826 TGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAA 2885 ||| || || || || ||||| || || ||| | ||| | ||||| | ||||||| Sbjct 117 TGCTACAAATGCAGGACAAATAAAAACTGGTGCTCCATCAAGAACTGATAGAGTTGCTAA 58 Query 2886 ATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAAGtt 2928 ||||||||||| | | || ||||| ||||||||||| Sbjct 57 GTACAACCAATTATTAAGAATTGAAGAAATGATTGGTGAAGTT 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155569550249232