Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq75038 309 3e-79 seq174639 288 1e-72 seq12672 279 6e-70 seq75039 185 1e-41 seq25705 181 1e-40 seq25321 167 3e-36 seq174640 165 9e-36 seq174641 147 2e-30 seq251946 116 4e-21 >seq75038 Length=481 Score = 309 bits (342), Expect = 3e-79 Identities = 357/481 (74%), Gaps = 0/481 (0%) Strand=Plus/Minus Query 160161 GTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTG 160220 |||| || ||||| || ||||| ||| || || || | |||||| || ||||| ||| Sbjct 481 GTCTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTG 422 Query 160221 CTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 160280 | ||||| | | ||||| | ||||| || || || || |||| |||||| | || | Sbjct 421 CGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAA 362 Query 160281 TCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATC 160340 | || || ||||| || | |||| |||| ||||||||||| || ||||| | ||||||| Sbjct 361 TTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATC 302 Query 160341 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATG 160400 | || || ||| | ||||| ||||| || || ||||| || | || ||||||||||||| Sbjct 301 CTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATG 242 Query 160401 GATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATG 160460 | || |||||||||| | | | || || || |||| ||| || || || Sbjct 241 GTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTG 182 Query 160461 GTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCG 160520 |||| | ||||| ||||| ||||| || || ||||| || ||||||||||| || || | Sbjct 181 GTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTG 122 Query 160521 GTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCG 160580 ||||||| || ||||||||||| || || || |||||||||||| | || |||||| | | Sbjct 121 GTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAG 62 Query 160581 CTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCA 160640 || ||||||||| |||||||| ||||||||| | | || |||| || |||||||| | Sbjct 61 CTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTA 2 Query 160641 A 160641 | Sbjct 1 A 1 >seq174639 Length=919 Score = 288 bits (318), Expect = 1e-72 Identities = 557/814 (68%), Gaps = 16/814 (2%) Strand=Plus/Plus Query 159830 AACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGC---AGCA 159886 || || ||||| | || || || || |||| ||| |||| ||| || | |||| Sbjct 105 AATCGTCTCTACATTGGGTGCTTTGGTATCCTAATGTTCCC---TCTTTTAACTTTAGCA 161 Query 159887 ACTATCTGCTTC-ATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCG 159945 ||||| ||||| ||| || || || ||| || | || || || ||||| || | Sbjct 162 ACTAT-TGCTTATATCACAGCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAATAAG 220 Query 159946 TGAACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCC 160005 ||||| || ||||| ||||| | || || || ||||| || | || || || | || Sbjct 221 AGAACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATTATAACAGGAGCTGTAATACC 280 Query 160006 CTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTC-GACG 160064 ||| || || ||||| |||| |||||||| ||||||| | | || | | || | Sbjct 281 AAGTTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGGGA-GTCAAATGGATTTGATG 339 Query 160065 AGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCT 160124 |||| | ||||| |||||| | | ||| | ||||| | || || || | || | Sbjct 340 AGTGCTTATATAATGGTGGTACATATCAATTTGTAGTACTTCATTTTATGCTTGGTGT-- 397 Query 160125 ATGCCTAT---ATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGA 160181 ||| | | |||||| | || |||||| || || | | | |||||| | || |||| Sbjct 398 -TGCTTGTTGGATGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGA 456 Query 160182 TCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCT 160241 | | ||| || | ||| || || || | || |||| ||| ||||| | || || || Sbjct 457 TATTTGTAGCTTTCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAA 516 Query 160242 TCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 160301 | ||||| | | || ||||||| |||||| | || || ||| |||||||| | || Sbjct 517 TTGGTCAAGCTAGCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTA 576 Query 160302 TGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTG 160361 ||||||| |||||||||||||| || || | |||||||| ||||| || || || || | Sbjct 577 TGCTTGTGTTCCAAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAG 636 Query 160362 CTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTC 160421 |||| ||||| || || || | || ||| |||||||| || | ||||| ||| | Sbjct 637 CTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCAC 696 Query 160422 TCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGG 160481 | | ||| || ||| | | || || ||| || ||||| |||||||| | Sbjct 697 TTCTTGCAGAAACTGCAGGAGATATTAGCCTAAATGTTGGATATAAGTTTGGTCAAGAAG 756 Query 160482 AAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATG 160541 | || ||||| | ||| ||||| ||||| || || ||| | | || || ||||||| Sbjct 757 ATGAAACTTATAGCATATCAGCAGCCCATGGTTATTTTGGTAGACTCATATTTCAATATG 816 Query 160542 CATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAA 160601 | ||||| || ||||| || ||| ||||||||||| || |||||||| ||| |||| | Sbjct 817 CTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCTAGCAGCTTGGCCAGTTATTGGGA 876 Query 160602 TCTGGTTCACTGCCCTTGGTGTTTCTACCATGGC 160635 | |||||||| || ||||| || ||| ||||| Sbjct 877 TTTGGTTCACAGCACTTGGAGTAAGTACAATGGC 910 >seq12672 Length=424 Score = 279 bits (308), Expect = 6e-70 Identities = 316/424 (75%), Gaps = 0/424 (0%) Strand=Plus/Plus Query 160218 CTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTG 160277 |||| ||||| | | ||||| | ||||| || || || || |||| |||||| | | Sbjct 1 CTGCGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAG 60 Query 160278 GTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGC 160337 | || || || ||||| || | |||| |||| ||||||||||| || ||||| | |||| Sbjct 61 GAATTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGC 120 Query 160338 ATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGC 160397 |||| || || ||| | ||||| ||||| || || ||||| || | || |||||||||| Sbjct 121 ATCCTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGC 180 Query 160398 ATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACT 160457 |||| || |||||||||| | | | || || || |||| ||| || || Sbjct 181 ATGGTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATG 240 Query 160458 ATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACT 160517 |||||| | ||||| ||||| ||||| || || ||||| || ||||||||||| || | Sbjct 241 CTGGTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATT 300 Query 160518 TCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCC 160577 | |||||||| || ||||||||||| || || || |||||||||||| | || |||||| Sbjct 301 TTGGTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCT 360 Query 160578 TCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCAT 160637 | ||| ||||||||| |||||||| ||||||||| | | || |||| || ||||||| Sbjct 361 TAGCTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCAT 420 Query 160638 TCAA 160641 | || Sbjct 421 TTAA 424 >seq75039 Length=421 Score = 185 bits (204), Expect = 1e-41 Identities = 271/381 (71%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 || || || ||| | ||| ||| ||||||| | ||| | |||||||| || || Sbjct 381 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 322 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 ||||| |||||| | || |||| || |||| || || | || || | ||||| || Sbjct 321 ATGATTCCAACTTTATTAACAGCTACC-TCTGTATTTATTATTGCTTTTGTTGCTGCACC 263 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || || ||||| || |||||||| || |||||||| | | || || ||||| Sbjct 262 TCCAGTAGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAA 203 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 || || | || || || |||| |||| |||||||||||| | || || ||||| || Sbjct 202 TATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAAT 143 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 ||||||||| || || | || || ||||| ||||| ||||| |||| ||| | | || Sbjct 142 TTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGT 83 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | |||||| | | || || | | ||||||||| ||||| |||||||| || | || Sbjct 82 TTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACTTTCGTTTCG 23 Query 160162 TCTCGGTATGCGTCCCTGGAT 160182 ||| || ||||| || ||||| Sbjct 22 TCTAGGAATGCGCCCTTGGAT 2 >seq25705 Length=358 Score = 181 bits (200), Expect = 1e-40 Identities = 221/299 (74%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 161851 CTTCGTCAGTTTGAACTTGCTCGTCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTC 161910 || |||||||||||| | || || || | || | ||||| ||||| |||| ||| Sbjct 302 CTACGTCAGTTTGAAATAGCACGACTAGTTTTAATTAGACCTTATAATGCACTTGCATTC 243 Query 161911 TCTGGTCCTATTGCTGTTTTTGTCAGC-GTCTTTCTCATATATCCTCTGGGACAGTCGTC 161969 || || || || || |||| | || | ||||| || || ||||| || || || || Sbjct 242 TCAGGACCAATAGCAGTTTATA-CATCTGTCTTCCTAATTTATCCACTTGGTCAATCTAG 184 Query 161970 CTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACA 162029 ||||||||| || ||| ||||||||||| ||||| ||| | ||| || | ||||| || Sbjct 183 CTGGTTCTTTGCACCAAGCTTTGGGGTTGCTGCTATCTTCCGATTCCTATTATTCCTTCA 124 Query 162030 AGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGG 162089 |||||| || |||||||| | ||||| || |||||||||||||| || || || ||||| Sbjct 123 AGGTTTTCATAATTGGACATTAAATCCTTTTCACATGATGGGTGTAGCTGGAATATTGGG 64 Query 162090 TGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATG 162148 ||||| || || || ||||| || |||| ||||| | ||||| | || ||||||| Sbjct 63 AGGTGCATTACTATCAGCTATCCATGGTGCTACTGTCGTTAACACTATTTATCAAGATG 5 >seq25321 Length=478 Score = 167 bits (184), Expect = 3e-36 Identities = 249/351 (71%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 || || || ||| | ||| ||| ||||||| | ||| | |||||||| || || Sbjct 129 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 188 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 ||||| |||||| | || |||| || |||| || || | || || | ||||| || Sbjct 189 ATGATTCCAACTTTATTAACAGCTACC-TCTGTATTTATTATTGCTTTTGTTGCTGCACC 247 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || || ||||| || |||||||| || |||||||| | | || || ||||| Sbjct 248 TCCAGTTGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAA 307 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 || || | || || || |||| |||| |||||||||||| | || || ||||| || Sbjct 308 TATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAAT 367 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 ||||||||| || || | || || ||||| ||||| ||||| |||| ||| | | || Sbjct 368 TTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGT 427 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACT 160152 | |||||| | | || || | | ||||||||| ||||| |||||||| Sbjct 428 TTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACT 478 >seq174640 Length=289 Score = 165 bits (182), Expect = 9e-36 Identities = 165/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 160459 TGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTT 160518 ||| || ||||| |||||||| || || ||||| | ||| ||||| ||||| || || Sbjct 256 TGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTT 197 Query 160519 CGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCT 160578 ||| | | || || |||||||| ||||| || ||||| || ||| ||||||||||| Sbjct 196 TGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCT 137 Query 160579 CGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATT 160638 || |||||||| ||| |||| || |||||||| || ||||| || ||| ||||| || Sbjct 136 AGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTT 77 Query 160639 CAATCTCAATGGTTTCAACTTCAACCAGTCCATC 160672 ||| | |||||||| ||||||||||| |||||| Sbjct 76 CAACTTAAATGGTTTAAACTTCAACCAATCCATC 43 >seq174641 Length=312 Score = 147 bits (162), Expect = 2e-30 Identities = 203/284 (71%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 160134 TGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCAT 160193 ||||| | || |||||| || || | | | |||||| | || ||||| | ||| || | Sbjct 312 TGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTT 253 Query 160194 ACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTT 160253 ||| || || || | || |||| ||| ||||| | || || || | ||||| | | Sbjct 252 TCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTA 193 Query 160254 CTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCC 160313 || ||||||| |||||| | || || ||| |||||||| | ||||||||| |||| Sbjct 192 GCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCC 133 Query 160314 AAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCG 160373 |||||||||| || || | |||||||| ||||| || || || || ||||| ||||| | Sbjct 132 AAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTG 73 Query 160374 GTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCT 160417 | || || | || ||| |||||||| || | ||||| ||| Sbjct 72 GAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCT 29 >seq251946 Length=233 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 160023 GTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTG 160082 || ||||||| ||||| ||||||||||| ||||| | || || ||| | ||||| |||| Sbjct 233 GTATTCACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTG 174 Query 160083 GTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTG 160142 | |||| || | | || | || || | | || ||| | ||||| ||||||| Sbjct 173 GCCCTTATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTG 114 Query 160143 AGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTC 160202 |||||||||| ||| ||| | ||||||||||| ||||||| |||||| | | | || | Sbjct 113 AGTGGGAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCAC 54 Query 160203 CAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGG 160251 | || || || || | || || || || || || || | ||||| || Sbjct 53 CTGTAGCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549632080418400