Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq148981 161 1e-34 seq148980 161 1e-34 seq157111 156 6e-33 seq157110 156 6e-33 seq236061 86.0 9e-12 >seq148981 Length=1183 Score = 161 bits (178), Expect = 1e-34 Identities = 363/543 (67%), Gaps = 2/543 (0%) Strand=Plus/Minus Query 162292 ATTATTAAAACAGTTCAACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAG 162351 |||||||| ||| | ||| ||| | ||||| |||| || || || || || ||| Sbjct 940 ATTATTAATGAGGTTAAGCCAACTGAGGTTTATAATTTAGGAGCACAAAGCCATGTGAAG 881 Query 162352 GTTTCATTTGATCAGCCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTG 162411 |||||||||||| ||||||| || || | || || | || || ||||| | Sbjct 880 GTTTCATTTGATTTAGCTGAATATACTGCTAATGTTGATGCCGTTGGAACACTAAGACTT 821 Query 162412 CTAGAAGCCGTCCGTCTTCTTGGTATGGAATCATAC-GTAAGAATCTACCAAGCGAGCAC 162470 | || || || ||| |||||| | || || ||| |||| || || || Sbjct 820 TTGGATGCAATCAAAACATGTGGAATGGAAA-ACACTGTTAGATTCTATCAGGCTTCTAC 762 Query 162471 CAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCC 162530 |||||| | ||||| ||| || || | || |||| |||| || ||| | ||||| Sbjct 761 GAGTGAGATGTATGGAAAAGTCCATGAAATTCCACAGACTGAAAAGACCCCATTTTATCC 702 Query 162531 ACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGA 162590 | || |||||||||| || ||| | |||| |||||||| | ||| || || || Sbjct 701 CAGGTCTCCTTATGGAGCAGCCAAAGTGTATGCTTTCTGGATTGTTGTAAATTATAGAGA 642 Query 162591 AAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGG 162650 | ||| | || ||| | | || || || |||||||||||||| |||| ||||| Sbjct 641 AGCCTACAATATGTTTGCAACCAATGGAATCCTGTTCAATCACGAAAGTCCACGTAGAGG 582 Query 162651 AGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCA 162710 || || || || ||| | ||||| |||| || | |||| | | ||||| || Sbjct 581 TGAAACTTTTGTAACAAGGAAGATAACGAGAGCAGTGGCTAAAATTCATTTAGGACTTCA 522 Query 162711 AAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTA 162770 | | | || |||||||||| || | || | | ||||||||||| |||| ||| || Sbjct 521 AGATAAGCTTGAACTTGGAAATCTGGACTCCAAAAGAGACTGGGGACATGCCAGAGATTA 462 Query 162771 CGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAAC 162830 || ||||| |||||| | || | ||||| || ||||||| || | |||| | ||||| Sbjct 461 TGTTGAGGCCATGTGGCTTATTTTACAGCATGAACAGCCAGAGGACTTTGTGGTGGCAAC 402 Query 162831 TGG 162833 ||| Sbjct 401 TGG 399 >seq148980 Length=1560 Score = 161 bits (178), Expect = 1e-34 Identities = 363/543 (67%), Gaps = 2/543 (0%) Strand=Plus/Minus Query 162292 ATTATTAAAACAGTTCAACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAG 162351 |||||||| ||| | ||| ||| | ||||| |||| || || || || || ||| Sbjct 1317 ATTATTAATGAGGTTAAGCCAACTGAGGTTTATAATTTAGGAGCACAAAGCCATGTGAAG 1258 Query 162352 GTTTCATTTGATCAGCCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTG 162411 |||||||||||| ||||||| || || | || || | || || ||||| | Sbjct 1257 GTTTCATTTGATTTAGCTGAATATACTGCTAATGTTGATGCCGTTGGAACACTAAGACTT 1198 Query 162412 CTAGAAGCCGTCCGTCTTCTTGGTATGGAATCATAC-GTAAGAATCTACCAAGCGAGCAC 162470 | || || || ||| |||||| | || || ||| |||| || || || Sbjct 1197 TTGGATGCAATCAAAACATGTGGAATGGAAA-ACACTGTTAGATTCTATCAGGCTTCTAC 1139 Query 162471 CAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCC 162530 |||||| | ||||| ||| || || | || |||| |||| || ||| | ||||| Sbjct 1138 GAGTGAGATGTATGGAAAAGTCCATGAAATTCCACAGACTGAAAAGACCCCATTTTATCC 1079 Query 162531 ACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGA 162590 | || |||||||||| || ||| | |||| |||||||| | ||| || || || Sbjct 1078 CAGGTCTCCTTATGGAGCAGCCAAAGTGTATGCTTTCTGGATTGTTGTAAATTATAGAGA 1019 Query 162591 AAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGG 162650 | ||| | || ||| | | || || || |||||||||||||| |||| ||||| Sbjct 1018 AGCCTACAATATGTTTGCAACCAATGGAATCCTGTTCAATCACGAAAGTCCACGTAGAGG 959 Query 162651 AGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCA 162710 || || || || ||| | ||||| |||| || | |||| | | ||||| || Sbjct 958 TGAAACTTTTGTAACAAGGAAGATAACGAGAGCAGTGGCTAAAATTCATTTAGGACTTCA 899 Query 162711 AAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTA 162770 | | | || |||||||||| || | || | | ||||||||||| |||| ||| || Sbjct 898 AGATAAGCTTGAACTTGGAAATCTGGACTCCAAAAGAGACTGGGGACATGCCAGAGATTA 839 Query 162771 CGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAAC 162830 || ||||| |||||| | || | ||||| || ||||||| || | |||| | ||||| Sbjct 838 TGTTGAGGCCATGTGGCTTATTTTACAGCATGAACAGCCAGAGGACTTTGTGGTGGCAAC 779 Query 162831 TGG 162833 ||| Sbjct 778 TGG 776 >seq157111 Length=1651 Score = 156 bits (172), Expect = 6e-33 Identities = 362/543 (67%), Gaps = 2/543 (0%) Strand=Plus/Plus Query 162292 ATTATTAAAACAGTTCAACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAG 162351 |||||||| ||| | ||| ||| | ||||| |||| || || || || || ||| Sbjct 342 ATTATTAATGAGGTTAAGCCAACTGAGGTTTATAATTTAGGAGCACAAAGCCATGTGAAG 401 Query 162352 GTTTCATTTGATCAGCCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTG 162411 |||||||||||| ||||||| || || | || || | || || ||||| | Sbjct 402 GTTTCATTTGATTTAGCTGAATATACTGCTAATGTTGATGCCGTTGGAACACTAAGACTT 461 Query 162412 CTAGAAGCCGTCCGTCTTCTTGGTATGGAATCATAC-GTAAGAATCTACCAAGCGAGCAC 162470 | || || || ||| |||||| | || || ||| |||| || || || Sbjct 462 TTGGATGCAATCAAAACATGTGGAATGGAAA-ACACTGTTAGATTCTATCAGGCTTCTAC 520 Query 162471 CAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCC 162530 |||||| | ||||| ||| || || | || |||| |||| || ||| | ||||| Sbjct 521 AAGTGAGATGTATGGAAAAGTCCAAGAAATTCCACAGACTGAAAAGACCCCATTTTATCC 580 Query 162531 ACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGA 162590 | || |||||||||| || ||| | |||| |||||||| | ||| || || || Sbjct 581 CAGGTCTCCTTATGGAGCAGCCAAAGTGTATGCTTTCTGGATTGTTGTAAATTATAGAGA 640 Query 162591 AAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGG 162650 | ||| | || ||| | | || || || |||||||||||||| |||| ||||| Sbjct 641 AGCCTACAATATGTTTGCAACCAATGGAATCCTGTTCAATCACGAAAGTCCACGTAGAGG 700 Query 162651 AGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCA 162710 || || || || ||| | ||||| |||| || | |||| | | ||| | || Sbjct 701 TGAAACTTTTGTAACAAGGAAGATAACGAGAGCAGTGGCTAAAATTCATTTAGGATTTCA 760 Query 162711 AAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTA 162770 | | | || |||||||||| || | || | | ||||||||||| |||| ||| || Sbjct 761 AGATAAGCTTGAACTTGGAAATCTGGACTCCAAAAGAGACTGGGGACATGCCAGAGATTA 820 Query 162771 CGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAAC 162830 || ||||| |||||| | || | ||||| || ||||||| || | |||| | ||||| Sbjct 821 TGTTGAGGCCATGTGGCTTATTTTACAGCATGAACAGCCAGAGGACTTTGTGGTGGCAAC 880 Query 162831 TGG 162833 ||| Sbjct 881 TGG 883 >seq157110 Length=1672 Score = 156 bits (172), Expect = 6e-33 Identities = 362/543 (67%), Gaps = 2/543 (0%) Strand=Plus/Plus Query 162292 ATTATTAAAACAGTTCAACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAG 162351 |||||||| ||| | ||| ||| | ||||| |||| || || || || || ||| Sbjct 342 ATTATTAATGAGGTTAAGCCAACTGAGGTTTATAATTTAGGAGCACAAAGCCATGTGAAG 401 Query 162352 GTTTCATTTGATCAGCCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTG 162411 |||||||||||| ||||||| || || | || || | || || ||||| | Sbjct 402 GTTTCATTTGATTTAGCTGAATATACTGCTAATGTTGATGCCGTTGGAACACTAAGACTT 461 Query 162412 CTAGAAGCCGTCCGTCTTCTTGGTATGGAATCATAC-GTAAGAATCTACCAAGCGAGCAC 162470 | || || || ||| |||||| | || || ||| |||| || || || Sbjct 462 TTGGATGCAATCAAAACATGTGGAATGGAAA-ACACTGTTAGATTCTATCAGGCTTCTAC 520 Query 162471 CAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCC 162530 |||||| | ||||| ||| || || | || |||| |||| || ||| | ||||| Sbjct 521 AAGTGAGATGTATGGAAAAGTCCAAGAAATTCCACAGACTGAAAAGACCCCATTTTATCC 580 Query 162531 ACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGA 162590 | || |||||||||| || ||| | |||| |||||||| | ||| || || || Sbjct 581 CAGGTCTCCTTATGGAGCAGCCAAAGTGTATGCTTTCTGGATTGTTGTAAATTATAGAGA 640 Query 162591 AAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGG 162650 | ||| | || ||| | | || || || |||||||||||||| |||| ||||| Sbjct 641 AGCCTACAATATGTTTGCAACCAATGGAATCCTGTTCAATCACGAAAGTCCACGTAGAGG 700 Query 162651 AGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCA 162710 || || || || ||| | ||||| |||| || | |||| | | ||| | || Sbjct 701 TGAAACTTTTGTAACAAGGAAGATAACGAGAGCAGTGGCTAAAATTCATTTAGGATTTCA 760 Query 162711 AAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTA 162770 | | | || |||||||||| || | || | | ||||||||||| |||| ||| || Sbjct 761 AGATAAGCTTGAACTTGGAAATCTGGACTCCAAAAGAGACTGGGGACATGCCAGAGATTA 820 Query 162771 CGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAAC 162830 || ||||| |||||| | || | ||||| || ||||||| || | |||| | ||||| Sbjct 821 TGTTGAGGCCATGTGGCTTATTTTACAGCATGAACAGCCAGAGGACTTTGTGGTGGCAAC 880 Query 162831 TGG 162833 ||| Sbjct 881 TGG 883 >seq236061 Length=520 Score = 86.0 bits (94), Expect = 9e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142792 CGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 373 CGGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGAT 314 Query 142852 TCCGTTATTCTCCACCA 142868 |||| || |||||||| Sbjct 313 CCCGTCATCCTCCACCA 297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689272218269280