Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_032766.1 Length=9555 Score E Sequences producing significant alignments: (Bits) Value seq154624 91.5 9e-15 seq154623 91.5 9e-15 seq154621 87.8 1e-13 >seq154624 Length=1417 Score = 91.5 bits (100), Expect = 9e-15 Identities = 210/309 (68%), Gaps = 22/309 (7%) Strand=Plus/Plus Query 1881 AACCAGTAGTCATTTGGCTGTTTGGAGAATCTGGCGTAGGAAAATCTGGAATGTCTTGGC 1940 ||||| | ||||| | | | ||| | || || || ||||||||||| ||| ||||| Sbjct 691 AACCACTTGTCATATATTTATATGGCAAGTCAGGTGTTGGAAAATCTGGTATGGTTTGGC 750 Query 1941 CCCTAGCTATAGATTTAAATAACGTATTTGT-------CCAT-AATGAAGAAGAAGCTAA 1992 | ||||||| || ||| | |||| | | || | ||| | |||| | | Sbjct 751 CATTAGCTATTGACTTA--TTACGTTTGGATGGAATTCCCGTGAATAAGGAAGGTGATTT 808 Query 1993 GGAATTTTCTA-AGAACATATATATGCGAAATGTGGAGCAGGAATTTTGGGATAATTACC 2051 ||| ||| |||| || || ||||| || || ||||| | ||||||||| ||| | Sbjct 809 GGATCCAACTAGAGAA-ATCTACATGCGCAACGTAGAGCAAAAGTTTTGGGATGGTTATC 867 Query 2052 AAGGTCAGA-ATGTAGTGATATATGATGATTTTGGTCAGCGAGTTGACTC----TCAACA 2106 | ||| |||| || | ||||||||||||| || ||||||||| ||| Sbjct 868 GATCACAGCGATGTGTTGTT-TATGATGATTTTGCGCAAGTAGTTGACTCAGTTTCA--- 923 Query 2107 GAAACCCAATGAGGAGTTTATGGAGCTAATTAGAACAGCAAATATAGCTCCTTATCCACT 2166 || || ||| |||||| |||||| | || ||||||| |||| |||| |||||||| || Sbjct 924 -AATCCAAATTTGGAGTTCATGGAGGTCATCAGAACAGGAAATTTAGCACCTTATCCTCT 982 Query 2167 CCACATGGC 2175 ||||||| Sbjct 983 ATACATGGC 991 >seq154623 Length=1476 Score = 91.5 bits (100), Expect = 9e-15 Identities = 210/309 (68%), Gaps = 22/309 (7%) Strand=Plus/Minus Query 1881 AACCAGTAGTCATTTGGCTGTTTGGAGAATCTGGCGTAGGAAAATCTGGAATGTCTTGGC 1940 ||||| | ||||| | | | ||| | || || || ||||||||||| ||| ||||| Sbjct 735 AACCACTTGTCATATATTTATATGGCAAGTCAGGTGTTGGAAAATCTGGTATGGTTTGGC 676 Query 1941 CCCTAGCTATAGATTTAAATAACGTATTTGT-------CCAT-AATGAAGAAGAAGCTAA 1992 | ||||||| || ||| | |||| | | || | ||| | |||| | | Sbjct 675 CATTAGCTATTGACTTA--TTACGTTTGGATGGAATTCCCGTGAATAAGGAAGGTGATTT 618 Query 1993 GGAATTTTCTA-AGAACATATATATGCGAAATGTGGAGCAGGAATTTTGGGATAATTACC 2051 ||| ||| |||| || || ||||| || || ||||| | ||||||||| ||| | Sbjct 617 GGATCCAACTAGAGAA-ATCTACATGCGCAACGTAGAGCAAAAGTTTTGGGATGGTTATC 559 Query 2052 AAGGTCAGA-ATGTAGTGATATATGATGATTTTGGTCAGCGAGTTGACTC----TCAACA 2106 | ||| |||| || | ||||||||||||| || ||||||||| ||| Sbjct 558 GATCACAGCGATGTGTTGTT-TATGATGATTTTGCGCAAGTAGTTGACTCAGTTTCA--- 503 Query 2107 GAAACCCAATGAGGAGTTTATGGAGCTAATTAGAACAGCAAATATAGCTCCTTATCCACT 2166 || || ||| |||||| |||||| | || ||||||| |||| |||| |||||||| || Sbjct 502 -AATCCAAATTTGGAGTTCATGGAGGTCATCAGAACAGGAAATTTAGCACCTTATCCTCT 444 Query 2167 CCACATGGC 2175 ||||||| Sbjct 443 ATACATGGC 435 >seq154621 Length=2964 Score = 87.8 bits (96), Expect = 1e-13 Identities = 192/280 (69%), Gaps = 22/280 (8%) Strand=Plus/Plus Query 1910 TCTGGCGTAGGAAAATCTGGAATGTCTTGGCCCCTAGCTATAGATTTAAATAACGTATTT 1969 || || || ||||||||||| ||| |||||| ||||||| || ||| | |||| | Sbjct 2267 TCAGGTGTTGGAAAATCTGGTATGGTTTGGCCATTAGCTATTGACTTA--TTACGTTTGG 2324 Query 1970 GT-------CCAT-AATGAAGAAGAAGCTAAGGAATTTTCTA-AGAACATATATATGCGA 2020 | || | ||| | |||| | | ||| ||| |||| || || ||||| Sbjct 2325 ATGGAATTCCCGTGAATAAGGAAGGTGATTTGGATCCAACTAGAGAA-ATCTACATGCGC 2383 Query 2021 AATGTGGAGCAGGAATTTTGGGATAATTACCAAGGTCAGA-ATGTAGTGATATATGATGA 2079 || || ||||| | ||||||||| ||| | | ||| |||| || | |||||||| Sbjct 2384 AACGTAGAGCAAAAGTTTTGGGATGGTTATCGATCACAGCGATGTGTTGTT-TATGATGA 2442 Query 2080 TTTTGGTCAGCGAGTTGACTC----TCAACAGAAACCCAATGAGGAGTTTATGGAGCTAA 2135 ||||| || ||||||||| ||| || || ||| |||||| |||||| | | Sbjct 2443 TTTTGCGCAAGTAGTTGACTCAGTTTCA----AATCCAAATTTGGAGTTCATGGAGGTCA 2498 Query 2136 TTAGAACAGCAAATATAGCTCCTTATCCACTCCACATGGC 2175 | ||||||| |||| |||| |||||||| || ||||||| Sbjct 2499 TCAGAACAGGAAATTTAGCACCTTATCCTCTATACATGGC 2538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30374091352848