Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq704 215 8e-54 seq2285 93.3 6e-17 >seq704 Length=136093 Score = 215 bits (238), Expect = 8e-54 Identities = 209/258 (81%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 33307 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 33364 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||||||| | ||||| | ||||| | | |||| | || Sbjct 33365 CTCGTTCATGGGGAACAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCATCGGGTT 33424 Query 120 ACCCGGACCTGTCGGC-CAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||||| ||| |||| || || || | || |||||| | | |||||||||||||||||| Sbjct 33425 ACCCGGTCCTTTCGGATCAGGGAGA-ACACACGTTGATTCCTTCAGTGTAGCGCGCGTGC 33483 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 33484 GGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAA 33541 Query 239 AGGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 33542 CGCCACTTGTCCCTCTAA 33559 >seq2285 Length=5733 Score = 93.3 bits (102), Expect = 6e-17 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| Sbjct 37 TCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 95 Query 221 AAACTTCCGTGGC 233 || | |||||| Sbjct 96 AATTTCGCGTGGC 108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751964864445