Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2285 219 8e-55 seq704 217 3e-54 >seq2285 Length=5733 Score = 219 bits (242), Expect = 8e-55 Identities = 222/283 (78%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| || ||||| ||| ||||| | |||||| |||||||||||||||| | Sbjct 811 TGCTCTTAACCGGGTGCTACGGAATGCCAGAAAGTTTACTCTGAAAAAATTAGAGTGCTT 752 Query 100 AAAGCAGGCCTTT---GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||| ||| || ||| |||||| | |||||||||||||||||||||| | ||| | Sbjct 751 AAAGCAAGCCGTTTGTGCTTGAATACTGTTGCATGGAATAATAGAATAGGACCT-CGGAT 693 Query 157 CTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 ||||||||||||||| | ||| || ||||||||||| ||||| || |||||| | | Sbjct 692 CTATTTTGTTGGTTT-TCGGAGTCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCG 634 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| || ||||||||||||||||||| ||||| ||| ||||||||||| | Sbjct 633 TATTGCGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACAACTGCGAAAGCAT 574 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | |||||||||||||||||||||| |||||||||| || || Sbjct 573 TTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTCAGAGG 532 >seq704 Length=136093 Score = 217 bits (240), Expect = 3e-54 Identities = 220/281 (78%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||| || ||| |||| ||| | || ||||||||||||||||||||||| || Sbjct 34232 TGCTCTTCGTTGAGTGCTTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGCTC 34173 Query 100 AAAGCAGGCCTT-TGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||| ||| ||||| |||||||||||| ||||||||| | ||||||| Sbjct 34172 AAAGCAGGCGGACTGCCTGAATAATCGCGCATGGAATAATGGAATAGGACCT-CGGTTCT 34114 Query 159 ATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 ||||||||||||| | || || ||||||||||| ||||| || |||||| | ||| Sbjct 34113 ATTTTGTTGGTTTTCGGAACTCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTA 34054 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || ||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct 34053 TTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACTACTGCGAAAGCATTT 33994 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||||||| |||||||||| || || Sbjct 33993 GCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTCAGAGG 33954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915155859904