Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq704 390 2e-106 seq2285 383 3e-104 seq102 219 7e-55 seq537 91.5 3e-16 seq1240 84.2 4e-14 >seq704 Length=136093 Score = 390 bits (432), Expect = 2e-106 Identities = 265/295 (90%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 28739 TACTGAGCAGGATTACCATTGCAACGACGTGTCATCAGTAGGGTAAAACTAACCTGTCTC 28798 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 28799 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGTG 28858 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28859 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 28918 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 28919 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 28978 Query 240 TCAAA-TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | | | |||||||||||||||||| |||||| ||| |||||| Sbjct 28979 TGAAACTCTCAACGAGCAAAAGGATCGATAGGCCACGCTTTCACGGTCCGTATTC 29033 >seq2285 Length=5733 Score = 383 bits (424), Expect = 3e-104 Identities = 262/294 (89%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 2816 TACTGAGCAGGATTACCATTGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 2875 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || Sbjct 2876 ACGACGGTCTAAACCCAGCTCACGTTCCCTGTTAGTTGGTGAACAATCAAACGCTTGGCG 2935 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2936 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 2995 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 2996 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 3055 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | | |||||||||||||||||| |||||| ||| ||||||| Sbjct 3056 TAAAACTCGTAAAGTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 3109 >seq102 Length=261110 Score = 219 bits (242), Expect = 7e-55 Identities = 214/275 (78%), Gaps = 13/275 (5%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||| ||||||| |||||||||| |||||||||| || ||| |||||||||||||| Sbjct 162627 GTCATCCGTAGGGTCAAACTAACCTTTCTCATGACGACCTTAACACAGCTCACGTTCCCA 162686 Query 90 ATTAGT----GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGA 145 ||||| ||||||||||| |||||||| ||| |||||| || | |||||||||| Sbjct 162687 TTTAGTCCATGGGTGAACAATTCAACGCTTGGCGACTTCTGCAACGCAACGATAGGAAGA 162746 Query 146 GCCGACATCGAAGGATCAAAAAGCAACG-------TCGCTATGAACGCTTGGCTGCCACA 198 ||||||||||||||||| ||||||| || ||||||||||||||||||| ||||| Sbjct 162747 GCCGACATCGAAGGATCGAAAAGCAGCGTGGTGTCTCGCTATGAACGCTTGGCTCCCACA 162806 Query 199 AGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAA 258 |||||||||||| ||||| ||| ||| | ||||| | || | | | | | | || Sbjct 162807 AGCCAGTTATCCATGTGGAAACATTTTTTACACCTTTTGCTTAAGAATCCTAAATTGAAA 162866 Query 259 AGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || | | |||||||| |||||| || ||| ||| Sbjct 162867 AGAACCTTTAGGCCACGCTTTCA--GTCTGTGTTC 162899 >seq537 Length=1119419 Score = 91.5 bits (100), Expect = 3e-16 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 141 GAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG 200 ||||||| |||| ||||||||||| |||| |||||||| |||||||||||| |||||| Sbjct 431985 GAAGAGCTGACAGAGAAGGATCAAATGGCAAAGTCGCTATAAACGCTTGGCTGTCACAAG 431926 Query 201 CCAGTTATCCCTGTG 215 |||||||||| ||| Sbjct 431925 TCAGTTATCCCAGTG 431911 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 |||||||| ||||||||||| |||| | |||||||||| ||||||||| ||||| |||| Sbjct 431555 GTCGCTATATACGCTTGGCTGTCACAGGTCAGTTATCCCAGTGGTAACTCTTCTGACACC 431496 Query 233 T 233 | Sbjct 431495 T 431495 >seq1240 Length=1381276 Score = 84.2 bits (92), Expect = 4e-14 Identities = 72/88 (82%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 133 TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 192 ||||||||||||||| || || ||| |||| | || | || |||||| |||| || Sbjct 89088 TATGATAGGAAGAGCAGATGTCAAAGATTCAATATGCTAA-TCACTATGAGTCCTTGTCT 89030 Query 193 GCCACAAGCCAGTTATCCCTGTGGTAAC 220 |||||||||||||||||||||||||||| Sbjct 89029 GCCACAAGCCAGTTATCCCTGTGGTAAC 89002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854358792288