Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq3013 102 1e-19 >seq3013 Length=560567 Score = 102 bits (112), Expect = 1e-19 Identities = 199/287 (69%), Gaps = 13/287 (5%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAG-TTACTGTCCAGCAATCCGCCTTCGCCACTGGTG 59 |||||||||||| ||||||| ||||| ||| | || | |||||||||| |||||| Sbjct 293975 CCCACGCTTTCGTGCCTCAGTGTCAGATTAAAAT--AGTTAATCGCCTTCGCCCCTGGTG 294032 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||| | |||||||| |||||||| |||||| |||||| ||| || |||| | Sbjct 294033 TTCCTTCTAGTATCTACGAATTTCACCTCTACACTAAAAATTCC-ATTAACT-TCCATTA 294090 Query 120 --CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTC--ACATC 175 ||||| ||||| ||||| || | ||| || | || | ||||| Sbjct 294091 ATCTCAATTTGTACAGTATCAAACGCCTTTCTTCAGTTATGC----TGCTTCCAAACATC 294146 Query 176 TGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCAC 235 ||||| | ||||| | ||||||| ||||| | || ||| ||||| |||| | Sbjct 294147 AGACTTATACAAACACCTACGCACCCTTTAAACCCATTGAAACCGAGTAACGTTTGCGCC 294206 Query 236 CTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 | || ||||||||| ||||||||| ||| |||| |||||||| Sbjct 294207 CCTTGTCTTACCGCGGTTGCTGGCACAAGGTTGGCCGGCGCTTATTC 294253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828761276133