Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq3013 167 4e-39 >seq3013 Length=560567 Score = 167 bits (184), Expect = 4e-39 Identities = 202/271 (75%), Gaps = 3/271 (1%) Strand=Plus/Plus Query 6 AGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTAT 65 || ||||| ||||||||| ||||| ||||| | || ||||||| || || || Sbjct 279949 AGAGCTTCCTACTTAGATGCTTTCAGTAGTTATCTCCGCCTG-CTTAGCTACCTGGCGAT 280007 Query 66 GCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAG 125 |||||| ||||||||| || ||||| || | | | ||||||||||||||| | Sbjct 280008 GCACTTAACAGTACAACCAGTACACCATTGGCAGGCTATTGCAGGTCCTCTCGTACTATG 280067 Query 126 -GACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGAC 184 | | |||| ||||| || ||||||| | | |||||| ||| | ||||||| |||| Sbjct 280068 CAATAACTCC-CTCAATGTTTACACGCCCATGGCAGATAGGAACCAACCTGTCTCACGAC 280126 Query 185 GTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTAC 244 | | |||||||||||| ||| | ||||||| ||||||||| | ||||||||||| ||| Sbjct 280127 GGTTTGAACCCAGCTCACGTATCACTTTAATCGGCGAACAGACGAACCCTTGGGAATTAC 280186 Query 245 TTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || |||||||||| || |||||||| || Sbjct 280187 TACAACCCCAGGATGTGATAAGCCGACACCG 280217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780763518828