Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq3013 188 2e-45 >seq3013 Length=560567 Score = 188 bits (208), Expect = 2e-45 Identities = 245/333 (74%), Gaps = 13/333 (4%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||| ||| ||||||||| ||||||||| || ||| || | ||||| || Sbjct 294249 AAGCGCCGGCCAACCTTGTGCCAGCAACCGCGGTAAGACAAGGGGCGCAAACGTTACTCG 294190 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT--GAAAG--GCT 128 | | | |||| ||||||||||||||||| || |||||| || || | ||| || Sbjct 294189 GTTTCAATGGGTTTAAAGGGTGCGTAGGTGTTTGTATAAGTCTGATGTTTGGAAGCAGC- 294131 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 || || || | | || ||||| |||| | | ||| | | | | || Sbjct 294130 ATAACTGAA-----GAAAGGCGTTTGATACTGTACAAATTGAGATTAATGGAAGTTAATG 294076 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||| |||||||| |||||||| |||||||| ||| ||||||||||| |||||||||| Sbjct 294075 GAATTTTTAGTGTAGAGGTGAAATTCGTAGATACTAGAAGGAACACCAGGGGCGAAGGCG 294016 Query 249 GCTTGCTGGACTGTAA-CTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307 | || | | ||| ||||||||||||| ||||||||||||||| ||| ||||||||| Sbjct 294015 ATTAACT--ATTTTAATCTGACACTGAGGCACGAAAGCGTGGGGAGTAAAAAGGATTAGA 293958 Query 308 TACCCTGGTAGTCCACGCCGTAAACGATGAATA 340 ||||| ||| |||||||| |||| ||||| || Sbjct 293957 GACCCTTGTAATCCACGCCCTAAAAGATGAGTA 293925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203141969664