Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq704 612 6e-173 seq2285 610 2e-172 >seq704 Length=136093 Score = 612 bits (678), Expect = 6e-173 Identities = 470/556 (85%), Gaps = 27/556 (5%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| ||| | ||||||||||||||||||| Sbjct 29067 CTTTTGCTCTACGCGAGGTTTCCGTCCTCGCCGAGCTCACCTTAGGACACCTGCGTTACC 29126 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| ||||||| |||| ||| |||||| Sbjct 29127 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTCAGAGCGGATC 29186 Query 127 G----------GC-CCGCGAAGGAC------------CTTA-ACGCCAGAAA--ATGGTC 160 | || |||||||| | ||| || ||||||| | |||| Sbjct 29187 GCGCGCGACCGGCTCCGCGAAGAGCGGCCGCATTGCGCTTCGACACCAGAAACGAGGGTC 29246 Query 161 GGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTC 220 | || ||||||||| ||| |||||||| ||||||||| ||||||||||||| Sbjct 29247 TTGCGACCCCGACTCCGCTTCACTGAATAAGTAAAGAAACGATAAAAGTAGTGGTATTTC 29306 Query 221 ACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGA 280 || ||||| |||||||||||||| |||||||||||| ||| |||||| ||||||| Sbjct 29307 ACCGGCGCCTTG-CGGCTCCCACTTATGCTACACCTCTCATGTCTCTTCACAGAGTCGGA 29365 Query 281 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG 340 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 29366 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTG 29425 Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29426 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 29485 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29486 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 29545 Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 ||||||||||||||| |||||| || |||| ||||||||||||||||||||||||||||| Sbjct 29546 GTTTACCCGCGCTTGTTTGAATCTCGTCACGTTGACATTCAGAGCACTGGGCAGAAATCA 29605 Query 521 CATTGCGTCAACATCA 536 ||||||||||||| || Sbjct 29606 CATTGCGTCAACACCA 29621 Score = 78.8 bits (86), Expect = 3e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468 || ||| | ||||||||||||| ||||||||| ||||| |||||||||||||||| |||| Sbjct 27115 ATAAGACGTCGAGGCATTTGGCCACCTTAAGACAGTCACAGTTACTCCCGCCGTTCACCC 27174 Query 469 G 469 | Sbjct 27175 G 27175 >seq2285 Length=5733 Score = 610 bits (676), Expect = 2e-172 Identities = 463/540 (86%), Gaps = 11/540 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||| || ||| ||||||| ||| |||| | ||||||||||||||||||| Sbjct 3143 CTTTTGCTCCACGCGAGGTTTCTGTCCTCACTGAGCTCACCTTAGGACACCTGCGTTACC 3202 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| ||||||| |||| ||| |||||| Sbjct 3203 ATTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTCAGAGCGGATC 3262 Query 127 GGCCC----GCGA---AGGAC-CTTAACGCCAGAAAATGGTC-GGTGAAGACCAGT-TCC 176 | || || | | || ||| ||| || | | | ||||||| || | ||| Sbjct 3263 GCACCAAATGCAAGAAATGATGCTTCGAACCAAAAGGTAGACCGGTGAAGGTCAATCTCC 3322 Query 177 GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG 236 |||| | ||| |||||||| ||||||||| |||||||||||||| |||| ||| Sbjct 3323 GCTTTACTGAATAAGTAAAGAAACGATAAAAGTAGTGGTATTTCAAGATCGCCTTG-CGG 3381 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| ||||||||| | ||| ||||||||||| |||||||||||||||||| Sbjct 3382 CTCCCACCTATGCTACACCTCCTATGTCTCTTCACAAAGTCAGACTAGAGTCAAGCTCAA 3441 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3442 CAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 3501 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3502 ATGGTAGCCAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 3561 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3562 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 3621 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 3622 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCA 3681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635121134304